Edwardsiella ictaluri: NT01EI_0175
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Entry
NT01EI_0175 CDS
T00912
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit, putative
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eic
Edwardsiella ictaluri
Pathway
eic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NT01EI_0175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eic03021
]
NT01EI_0175
03400 DNA repair and recombination proteins [BR:
eic03400
]
NT01EI_0175
Enzymes [BR:
eic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NT01EI_0175
Transcription machinery [BR:
eic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NT01EI_0175
DNA repair and recombination proteins [BR:
eic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NT01EI_0175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ACR67422
UniProt:
C5BHE4
LinkDB
All DBs
Position
173101..177321
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKGMDLEAECEQLREELGETNSETKRKKLTKRIKLLEAFILSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGDPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERIYRAG
LASLHARVKVRITQYSKSADGEMVPNTGLIDTTVGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNACYRALGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKAGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSSETVINRDGEEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVLKPGTADILVPRNTLLNEKWCDLLEEHSVDSVKVRSVVSCETDFGVCAHCYG
RDLARGHLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGNLKL
SNAKFVVNSDGKLVITSRNTELKLIDEFGRTKESYKVPYGATLAKGDSAEVNGGETVANW
DPHTMPVITEVSGFIRFADMIDGQTVTRQTDELTGLSSQVVLDSAERTGSGKDLRPALKI
VDANGDDVLLPGTDMPAQYFLPGKAIVQLEDGIAISAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPLDGSDTYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVNAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIANAGSSEFLEGEQVEVSRVKIANRLLESDGKIAATYMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRSTDTSSA
PQVSAEEASANLAELLNAGLLGGNDE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactgaagtttctgaaagcgcaaactaagaccgaagagtttgacgcgatc
aaaattgcgctggcttcgccagacatgatccgttcctggtctttcggcgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagccggaacgtgacggtcttttctgcgcccgt
atttttgggccggtgaaagattacgagtgcctgtgcggtaagtacaagcgcttgaaacac
cgtggcgtcatctgtgaaaaatgtggcgttgaagtgacccagaccaaggtgcgccgtgag
cgcatgggtcacatcgaactggcctcaccgaccgcgcacatctggttcctgaagtccctg
ccgtcccgtatcggtctgttactggacatgccgctgcgtgacatcgaacgcgtactgtac
ttcgaatcttatgtcgtcgtcgaaggcgggatgaccaacctggagcgtcgtcagatcctg
actgaagagcagtatctggacgcactggaagagttcggtgacgaattcgacgccaagatg
ggcgccgaggcgatccaggctctgctgaaagggatggatctggaagccgagtgcgagcag
ctgcgtgaagagctgggtgagaccaactccgagaccaagcgtaagaagctgaccaagcgc
atcaagctgctggaagcgttcattctgtctggcaacaagccggagtggatgatcctgacc
gtgctgccggtattgccgccggatctgcgtccgctggttccgctggacggcggtcgtttc
gcgacctccgatctgaacgatctgtaccgtcgggtgatcaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcgccggatatcatcgtacgtaacgaaaagcgtatgttgcag
gaagcggtcgatgcgctgttagataacggccgtcgcggtcgtgccatcacgggctccaac
aagcgtccgctgaagtctctggccgacatgatcaagggtaagcagggtcgcttccgtcag
aacctgctgggtaaacgcgtcgactattccggtcgttccgttatcaccgtaggtccatac
ctgcgcctgcatcagtgcggtctgccgaagaagatggcactggagctgttcaagccgttc
atctatggcaagctggagctgcgtggtcttgctaccaccatcaaagcggccaagaagatg
gtcgagcgtgaagaagccgtggtgtgggatatcctcgatgaggtgatccgcgagcatccg
gtgatgctgaaccgtgcgccgaccctgcaccgtctgggtatccaggcgttcgaaccgctg
ctgatcgaaggtaaggccattcagctgcacccgctggtgtgtgcggcatacaacgccgac
ttcgatggtgaccagatggcggtacacgtaccgttgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctctccccggcgaatggcgatccgatcatc
gttccgtctcaggacgtagtattgggtctgtactacatgacccgtgactgcgtgaacgcc
aaaggcgaaggcatggtgttgagcggcccgaaagaggccgagcgtatttatcgcgccggt
ctggcgtcgctgcatgcccgcgttaaagtgcgtatcacccagtacagcaaaagtgccgat
ggcgagatggttccgaacaccggacttatcgacaccaccgttggccgcgccatcctgtgg
atgatcgtaccgaaaggtctgccgtactctatcgttaaccagccgctgggcaagaaagcc
atctccaagatgctgaacgcctgctaccgcgcgctgggtctgaagccgaccgttatcttc
gctgaccagatcatgtataccggtttcgcctatgcggcgcgctccggtgcgtctgtcggc
atcgacgacatggtgatcccggagaagaaagcggggattatcgccgaggccgaagccgaa
gtggccgagatccaggagcagttccagtctggtctggtgaccgccggcgaacgttataac
aaggtcatcgatatctgggccgccgcgaacgagcgcgtggccaaggcgatgatggaaaac
ctgtctagcgaaaccgttatcaaccgcgatggcgaagaagagcgtcaggtctcctttaac
agcatctttatgatggccgactccggtgcgcgtggttctgccgcccagatccgtcagctg
gccggtatgcgtggcctgatggcgaagccggatggttccatcatcgaaacaccgatcacc
gcaaacttccgtgagggtctgaacgtactgcagtacttcatctcaactcacggtgcgcgt
aaaggtctggcggataccgcactgaagacggcgaactccggttacctgacccgtcgtctg
gtcgacgtggcccaggacctggtggttatcgaggacgattgtggtacccacaacggcatc
gtgatgaccccggttatcgaaggtggcgacgttaaagagccgctgcgtgaccgcgttctg
ggtcgagtgacggcagaagaagtgctgaagccgggtacggcggacattctggtgccgcgt
aacaccctgctgaacgaaaaatggtgtgacctgctggaagagcactctgtcgacagcgtg
aaagtacgctccgtcgtaagctgtgaaactgacttcggcgtgtgcgcccactgctacggt
cgcgatctggcccgtggtcacctggtgaacaaaggcgaagccatcggcgttatcgcggca
cagtccatcggtgaaccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gcatcgcgtgcggcggcggagtccagcatccaggtgaagaacaagggtaacctgaagctg
agcaacgccaagttcgtggtgaactctgacggtaagctggttatcacctcacgtaatacc
gagctgaagctgatcgacgaattcggtcgtaccaaggaaagctacaaagtgccttacggt
gccacgctggccaagggtgacagtgccgaggtgaacggcggtgagacagtggctaactgg
gatccgcataccatgccggttatcactgaggttagcggcttcatccgcttcgccgatatg
atcgacggccagacggtaacccgtcagaccgacgagttgaccggtctctcctctcaggtg
gttctggattctgcagagcgtaccggcagcggtaaagatctgcgtccggcgctgaagatc
gttgacgccaacggtgatgacgtgctgctgccgggtaccgatatgccggcccagtacttc
ctgccgggtaaggcgatcgtgcagctggaggatggcattgccatcagcgccggtgatacc
ctggcgcgtattccgcaggaatctggcggtaccaaggatatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcccgtcgtccgaaagagccggcaatcctggctgagatcagc
ggtgtggtttccttcggtaaagagaccaagggcaagcgtcgattggtgattacgccactg
gatggcagcgatacctacgaagagatgattccgaagtggcgtcagctcaacgtgtttgaa
ggtgaacgcgttgaacgcggcgacgtgatctccgatggtccggagtctccacacgacatc
ctgcgtctgcgcggtgtgaacgcggtaacccgctatatcgttaacgaagtccaggacgta
taccgtctgcagggcgttaaaattaacgataagcatatcgaggttatcgtgcgtcagatg
ctgcgtaaggcgaccatcgctaatgccggaagctctgagttcctggaaggcgagcaggtg
gaagtgtcccgcgtcaagattgccaatcgcctgttggagtctgatggcaagattgctgcg
acctatatgcgcgatctgctgggtatcaccaaagcgtctctggcgaccgagtccttcatc
tctgcggcctccttccaggagactacccgcgtgctgactgaagcggccgttgccggtaag
cgtgatgagctgcgtggcctgaaagagaacgtcatcgttggtcgtctgatcccggcgggt
accggctatgcctaccaccaggatcgcatgcgtcgtcgatctaccgatacgtctagcgca
ccgcaggtgagcgcggaagaagccagcgctaacctggccgagctgctgaacgcaggtctg
ctgggtggcaatgacgaataa
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