Edwardsiella ictaluri: NT01EI_2381
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Entry
NT01EI_2381 CDS
T00912
Name
(GenBank) ribonuclease, RNaseE/RNaseG family, putative
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eic
Edwardsiella ictaluri
Pathway
eic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NT01EI_2381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eic03019
]
NT01EI_2381
03009 Ribosome biogenesis [BR:
eic03009
]
NT01EI_2381
Enzymes [BR:
eic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NT01EI_2381
Messenger RNA biogenesis [BR:
eic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NT01EI_2381
Ribosome biogenesis [BR:
eic03009
]
Prokaryotic type
rRNA processing factors
NT01EI_2381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
potato_inhibit
Draxin
Motif
Other DBs
NCBI-ProteinID:
ACR69551
UniProt:
C5BA71
LinkDB
All DBs
Position
2277784..2280999
Genome browser
AA seq
1071 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSSYSAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQIPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLA
LSILRLIEEEALKENSREVHAIVPVPVASYLLNEKRDAVNAIEKRQPDVRVIVVPNEQMQ
TPHYAVMRVRKGEETHTLSYKLPQLHEAEACGDEEVPAERKRPEQPALAAFSLNVAAPPI
DAAQDKPIAADVAPTERPQPVADTRPGLFGRLVASLKGIFAGEAAPAPVQEDKPAVSAER
PREESRSPQERRGRRQNPRRERGERGERGDRPERGERPERGERPERANRDGRENRDEQRR
GRRQTQPTLATESGVEENAQQREEQQQRREQRNERQRRRQEEKRQAQQEVKALDSATQPD
EEIAEESVPAQRRQRRQLSQKIRIGDSASAVVNTDADTAVAPVADATTAPALPVVSAQPQ
ESATAATEEDNAPRHENGMPRRSRRSPRHLRVSGQRRRRYRDERYPQQSPMPLTLAVYSP
EMASGKVWISYPVATPAAAETAALETPRVMEESAAPVTVETLAAVPAETTRPEAIAEAVV
NDTATAEPVVQAPAIIVPAAAVEEQACEAIAASPSPVTAEESVTHAVCAAAAPTLEEALP
ALAQAEAQAAEAELKAEAEAEAEAEAEASVAAPMVAPAAMAPSDTHAATHEHGRASAPMT
TAPAPAYVTPAAVVSTWVRPEYDFHGRSAAGADAATSQAAAPATKPVMPQE
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaggagttgcgcgtcgcccttgtggat
ggccagcgactgtacgatctggatattgaaagcccgggtcacgaacagaagaaagcaaac
atttacaagggtaaaatcacccgtattgagcccagtctggaagccgcctttgttgactac
ggcgctgaacgacacggttttctgcccctcaaagagatcgcccgcgaatattttcccagc
agctactccgcccacggccgtcccaacattaaggacgtgctgcgcgaaggccaggaggtc
attgttcaggtcgataaagaagagcgtggcaacaaaggggctgcgctgaccacctttatc
agcctggcgggcagctatctggtgctgatgcccaacaacccgcgcgccggcggtatctcc
cgccgtatcgaaggtgatgaccgcaccgagctgaaagaggcactctcctctctgcagatc
cctgacggtatgggactgatcgtccgcaccgccggcgtcggcaagtctgccgaagcgctg
cagtgggatctctctttccgcctgaagcactgggacgccatcaagaaagccgccgaaggc
cgccctgcgccgttcctgatccatcaggaaagcaacgttatcgtccgcgccttccgtgac
tatctgcgcccggacatcggcgaaatcctgatcgacaacccgaagatcctcgacttggcc
aagcagcatatcgccgccttgggccgtccagacttcagcagtaaaatcaagctgtatacc
ggtgagatcccgctgttcagccactatcagatcgagtcacagatcgagtccgccttccag
cgtgaagtccgtctgccctccggcggctctatcgttatcgacagcactgaggcgctgacc
gccatcgatatcaactctgcccgcgctacccgcggcggcgatatcgaagagacggcgttc
aacaccaatctggaagccgccgatgaaatcgcccgtcagctgcgcctgcgcgacctgggc
ggtctgatcgtgatcgactttatcgatatgaccccggtacgccaccagcgcgaggtggaa
aaccgcctgcgcgatgccgtacgtcaggatcgcgcccgtattcagatcggccggatctcc
cgctttggcctgctggagatgtcccgccagcgcctcagcccctctctgggtgaatccagc
caccacgtctgcccacgctgtaacggcaccggtaccgtacgtgacaacgaatcactggcg
ctgtccattctgcgtctgatcgaagaggaagcactgaaggagaactcccgtgaagtgcac
gccatcgtgccggtaccggtcgcctcttatctgctgaacgaaaagcgtgacgccgtaaac
gccattgagaaacgtcagccggacgtgcgggttatcgtggtacccaacgagcaaatgcag
accccgcactatgccgttatgcgggttcgcaaaggtgaagagacccataccctgagctac
aagctgccgcagctgcacgaagcggaagcctgcggtgatgaagaggtgccggcagagcgt
aagcgtccggagcagcctgcactggcggcctttagcctgaatgtcgctgcaccgccgatc
gacgccgcgcaggataagcctatcgctgccgacgtcgcaccgactgagcgcccgcagccg
gtagccgacacccgtccgggactgtttggtcgcctggttgcctccctgaaagggatcttc
gccggtgaagccgcaccggcgccggtgcaggaagataaacctgccgtcagcgcagagcgt
ccgcgtgaagagagccgctccccgcaggagcgccgcggtcggcgtcagaatccgcgtcgt
gaacgcggtgagcgcggtgagcgcggtgatcgtccggagcgcggtgagcgtccggagcgt
ggtgaacgtccggagcgtgcgaaccgcgacggccgtgaaaaccgcgacgaacagcgccgt
ggccgccgccagactcagccgacactggcgacagagagcggcgtagaggagaatgcccag
cagcgcgaagagcagcaacagcgccgcgagcagcgcaacgagcgtcagcgtcgtcgtcag
gaagagaagcgccaggcccagcaagaggtcaaggcgctggactccgccacacagccagat
gaggagatcgcagaggagagcgtaccggcccagcgccgtcaacgccgtcagctgagccag
aaaatccgcatcggcgatagcgcgtcagcagtcgtcaataccgatgcagataccgctgtg
gcaccggtcgccgacgcgaccaccgctccggctctgccggtggtcagcgctcagcctcag
gagagtgccaccgcggcaacggaggaagataacgcgccgcgccatgaaaatggcatgccg
cgccgctcccgccgttcaccgcgccacctgcgcgtcagtgggcagcgccgtcgccgctat
cgtgacgagcgttatccgcagcagtctccgatgccgttgacgctggcggtatactctccg
gagatggcctccggcaaggtgtggatcagctatcctgtcgccaccccggccgccgccgag
accgccgcgctcgaaacgccgcgcgtcatggaggagagcgccgccccggtaacggtagag
accctcgccgccgtaccggctgaaaccacgcgtccagaggccatcgccgaggccgtcgtc
aacgacaccgcgaccgccgaaccggtggtgcaggcgccggcgatcatcgtcccggccgct
gccgttgaggagcaggcctgcgaggccatcgcggcatcgccgtcgccggtgacagcagag
gagagcgtcacgcacgccgtctgtgccgccgccgcaccgacgctggaagaggcactgcct
gcattggcccaggccgaagcgcaggctgctgaagcggaactcaaggccgaagccgaagcc
gaagccgaagccgaagccgaagccagcgtagccgcccccatggtagcgccggcggcaatg
gccccgagcgatacgcacgccgcgacgcacgaacacggtcgcgccagcgcgccgatgacc
acggcaccggcgccagcctatgtcacaccggcagcggtagtcagcacctgggttcgcccg
gagtatgacttccacggccgcagtgccgccggtgcagacgctgcgaccagtcaggctgca
gcgccagccacgaaaccggtcatgccgcaggagtaa
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