Edwardsiella ictaluri: NT01EI_2621
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Entry
NT01EI_2621 CDS
T00912
Name
(GenBank) ATP-dependent RNA helicase RhlE, putative
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eic
Edwardsiella ictaluri
Pathway
eic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NT01EI_2621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eic03019
]
NT01EI_2621
Enzymes [BR:
eic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NT01EI_2621
Messenger RNA biogenesis [BR:
eic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NT01EI_2621
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
ERCC3_RAD25_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ACR69789
UniProt:
C5BG66
LinkDB
All DBs
Position
complement(2507746..2509068)
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AA seq
440 aa
AA seq
DB search
MSFDSLGLCAELLRAVEEQGYREPTPIQQQAIPVVLQRRDLMASAQTGTGKTAGFTLPLL
QLLHQNPKSGKGRRPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK
RQNLLFSATFSDEIKALAASLLHNPAEVEVARRNTASELVTQHVHLVDKKRKRELLSFLI
GTRDWRQVLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLLRDI
ERLLKRPIPRMAIAGYEPDPSIKAEPIQNGRQGGRQNSGRTERSGQGRRAEGQRSTAPRQ
GQNRRPRRPAEQGKGRTEGR
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcccttggcctgtgtgccgaactgttacgcgctgtggaagagcagggc
tatcgtgagcccaccccgatccaacagcaggccattcccgtggtgctgcagcgtcgcgat
ctgatggccagcgcccagaccggcaccggtaagacagccggctttaccctgccgttgctg
cagctgctgcaccagaacccgaaaagtggtaaaggacgtcgcccggtacgggcgctgatc
ctgacgccaacccgcgagctggcggcgcagatcggtgaaaacgtacgcgagtacagccgc
catctgccgttgcggtcactggtggtgttcggtggcgtgagcattaacccgcagatgatg
aagctgcgtggcggcgtggatgtgctggtggcgacgccggggcgcctgctggatctggcc
catcagaatgcggtggatctgtctcaggtcgagatcctggtgctggatgaagccgaccgg
atgctggatatgggctttatccacgatatccgccgcgtgctggcccgtctgccggccaaa
cggcaaaacctgctgttttccgccaccttctccgatgagatcaaggcgctggcagcctca
ctgctgcataacccggccgaggtggaagtggcgcgccgcaataccgcgtcagagctggtg
acccaacacgtgcatctggtggataagaagcgtaagcgtgagctgctctcttttctgatc
ggcacccgggattggcgtcaggtgctggttttcacccgaaccaagtacggtgccaaccac
ctggcggagcagctgaataaagacggcatcagcgcggcggcgatccacggcaacaaaagc
cagggggcgcgtacccgcgcgctggcggactttaagagcggtgatattcgggtgctggtg
gcgacggatatcgccgcgcgcggcctggatatcgatcagctgccctatgtggtgaactat
gagctgcccaacgtgccggaggactacgtgcaccgtatcggccgcaccgggcgggcccag
gcaaccggtgaggcgctgtcgctggtctgcgtggatgagcataagctgctgcgcgatatt
gaacgtctgctgaagcgtccgattccgcgcatggccattgcgggctatgagccggatccg
agtattaaggccgagccaattcagaatggccgccagggtggacgccagaacagcggtcgt
acggaacgttcggggcaggggcgccgcgcagagggacagcgcagcaccgcgccgcgtcag
gggcaaaaccgccgcccgcgccgtccggctgagcagggtaaggggcgtaccgaggggcgc
tga
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