Escherichia coli O18 K1 H7 IHE3034 (ExPEC): ECOK1_3583
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Entry
ECOK1_3583 CDS
T01997
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eih
Escherichia coli O18:K1:H7 IHE3034 (ExPEC)
Pathway
eih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECOK1_3583 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eih03019
]
ECOK1_3583 (deaD)
03009 Ribosome biogenesis [BR:
eih03009
]
ECOK1_3583 (deaD)
Enzymes [BR:
eih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ECOK1_3583 (deaD)
Messenger RNA biogenesis [BR:
eih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECOK1_3583 (deaD)
Ribosome biogenesis [BR:
eih03009
]
Prokaryotic type
rRNA helicases
ECOK1_3583 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
ADE90999
LinkDB
All DBs
Position
complement(3678871..3680826)
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AA seq
651 aa
AA seq
DB search
MLINFMMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIP
HLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFS
KHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA
DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP
DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD
MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR
AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESS
DLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDR
GPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRY
IGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGF
GGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
ttgctgatcaatttcatgatgagttatgtagactggccgccattaattttgaggcacacg
tactacatggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatcctt
gaagcccttaacgatctgggttacgaaaaaccatctccaattcaggcagagtgtattcca
catctgctgaatggccgcgacgttctgggtatggcccagacggggagcggaaaaactgca
gcattctctttacctctgctgcagaatcttgatcctgagctgaaagcaccacagattctg
gtgttggcaccgacccgcgaactggcggtacaggttgctgaggcaatgacggatttctct
aaacacatgcgcggcgtaaacgtggttgccctgtacggcggccagcgttatgacgtgcaa
ttacgcgccctgcgtcaggggccgcagattgttgtcggtactccgggccgtctgctggac
cacctgaaacgtggcactctggacctctctaaattgagcggtctggttctggatgaagct
gacgaaatgctgcgcatgggcttcatcgaagacgttgaaaccattatggcgcagatcccg
gaaggtcatcagaccgctctgttctctgcaaccatgccggaagcgattcgtcgcattacc
cgccgctttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgtcct
gacatcagccagagctactggactgtctggggtatgcgtaaaaacgaagcactggtacgt
ttcctggaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgact
ctggaagtggcagaagctcttgagcgtaacggctacaacagcgccgcgctgaacggtgac
atgaaccaggcgctgcgtgagcagacactggaacgcctgaaagatggtcgtctggacatc
ctgattgcgaccgacgttgcagcccgtggcctggacgttgagcgtatcagcctggtggtt
aactacgatatcccgatggattctgagtcttacgttcaccgtatcggtcgtaccggtcgt
gcaggtcgtgctggtcgtgcactgctgttcgttgagaaccgtgagcgtcgtctgctgcgc
aacatcgaacgcaccatgaagctgaccattccggaagtagaactgccgaacgcagaactg
ctgggcaaacgtcgtctggaaaaatttgccgctaaagtacagcagcagctggaaagcagc
gatctggatcaataccgtgcactgctgagcaaaattcagccgactgccgaaggtgaagag
ctggatctcgaaactctggcagccgcactactgaaaatggcacagggtgaacgtactctg
attgttccgccagatgcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgt
ggtccgcgcgatcgtaacgaccgtggcccgcgtggcgaccgtgaagatcgtccgcgtcgt
gaacgtcgtgatgttggcgatatgcagctgtaccgtattgaagtgggccgcgatgatggt
gttgaagttcgtcatatcgttggcgcgattgctaacgaaggtgacatcagcagccgttac
atcggtaacatcaagctgtttgcttctcactccaccatcgaactgccgaaaggtatgccg
ggtgaagtgctgcaacactttacgcgtactcgcattctcaacaagccgatgaacatgcag
ttgctgggcgatgcacagccgcatactggtggtgagcgtcgtggcggtggtcgtggtttc
ggtggcgaacgtcgtgaaggcggtcgtaacttcagcggtgaacgccgtgaagggggtcgt
ggtgatgggcgtcgttttagcggcgaacgtcgtgaaggccgcgcaccgcgtcgtgatgac
tctaccggtcgtcgtcgtttcggtggtgatgcgtaa
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