Entamoeba invadens: EIN_084000
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Entry
EIN_084000 CDS
T04133
Name
(RefSeq) exosome complex exonuclease RRP6, putative
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
eiv
Entamoeba invadens
Pathway
eiv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eiv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EIN_084000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eiv03019
]
EIN_084000
Messenger RNA biogenesis [BR:
eiv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
EIN_084000
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
14884062
NCBI-ProteinID:
XP_004184594
LinkDB
All DBs
Position
Unknown
AA seq
517 aa
AA seq
DB search
MKQSEQVDAYCQDLFKISRQLTGFASKISEGDDYREMMSYQAFNTATEKTLKHTTECLQE
IMTLHPKLKTKMTVNEKVRPTDDDVVSHVVDFLLEVVELEELEGQMRGKIDTSKSVTNKP
QTKFTDKPDNFATTYTPKCLKKYHSDYPVNTVPHPYINEIRNLQLSEWQKVPCNPQAPLS
FENTPLLFVQNMDELNRLIKTLNNVDQFAVDVEHHSEHSYNGFACLMQISTRSEDFVVDV
ITLRDSIHLLNEPFTNPKIEKVFHGCDFDMVWLSYNFGLYVVNNFDSGQAARCLKLQHFS
LKFLLEKYVGVEADKKYQLADWRIRPLTQEMINYARGDTHYLLYICDLMRNECLEQNVLY
EVQAKSNELCLRLFKPTIYNDAAVERIAKKSWIKKSQFKAFKKLFLLRDKIAREEDESPH
SIMSQSVLNSILSEVPTDFEKLKMACLPKIPYFVEMHSMEIINLMKEEMAEVKKGAEEQL
KTQTTVNDSVKFVETTLEDGYERTVIRSTKDFISLFD
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagtcggaacaagtggatgcttattgtcaagacttgtttaaaatatcgcgacaa
ttgactggatttgcgtcgaaaatatcagaaggcgatgattatagagaaatgatgtcatat
caagcttttaataccgcgactgagaaaaccctaaaacacaccacagagtgtttacaagag
atcatgacactccacccgaaattgaaaactaaaatgacagtgaacgaaaaggttcgacca
acagatgatgacgtcgtctcacatgttgtcgacttcttgttggaagttgttgagcttgaa
gagttggaaggacaaatgagagggaaaatcgatacatcaaagtcagtgacaaacaaacca
caaacgaaattcacagacaaacctgataacttcgcaacgacatacaccccaaagtgtctt
aaaaagtatcactcggattatccggtgaacacagtaccccatccgtatatcaacgaaatc
agaaatttacaattgagcgaatggcaaaaagtgccttgcaacccgcaagccccactttca
tttgaaaacacgccgctgttatttgtacaaaatatggacgaattgaatcgattaatcaaa
accctaaacaacgttgatcaatttgcagtcgatgtcgaacatcatagcgaacattcatat
aatggatttgcatgtttgatgcaaatcagtacacgctctgaagactttgttgttgatgtg
atcacgttgagggattctattcatttgttgaacgaaccatttacaaaccctaaaattgag
aaagtgttccacgggtgtgacttcgatatggtttggttatcgtataactttggattgtac
gtagttaataattttgactcgggacaagctgctcgatgtcttaaattgcaacatttttca
ctcaaattcttacttgaaaaatatgttggtgtagaggccgacaaaaagtatcaattagcc
gattggagaatccgtcccctcacgcaagaaatgatcaattacgcaagaggcgacacacat
tacttgttgtatatttgcgatttgatgcgcaacgagtgtttggagcaaaatgtgttgtat
gaggtgcaagccaaatccaatgaactgtgtttgaggctgtttaagccaacaatttacaac
gacgcggccgtcgaacgcatcgcgaagaagtcgtggatcaagaagtcccaatttaaagcg
ttcaaaaaattgtttttgttgcgagacaaaattgcacgagaggaagatgagagtccgcac
tcaataatgtcacaaagtgttttgaactccatattgtccgaagtcccaacagactttgaa
aaactgaagatggcatgtttaccaaagatcccatacttcgttgaaatgcactcaatggag
atcattaacttaatgaaagaggaaatggctgaggtgaaaaaaggagcagaggaacaactg
aagacacaaacaacagtgaatgatagtgtaaaatttgtggagactacactggaagatggg
tatgaaagaacagtgatacgaagtacaaaagatttcattagcttgtttgactga
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