Entamoeba invadens: EIN_098520
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Entry
EIN_098520 CDS
T04133
Name
(RefSeq) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
eiv
Entamoeba invadens
Brite
KEGG Orthology (KO) [BR:
eiv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eiv03016
]
EIN_098520
Enzymes [BR:
eiv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EIN_098520
Transfer RNA biogenesis [BR:
eiv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EIN_098520
Prokaryotic type
tRNA splicing ligases
EIN_098520
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
bCoV_S1_RBD
ExbD
Motif
Other DBs
NCBI-GeneID:
14886457
NCBI-ProteinID:
XP_004254296
UniProt:
A0A0A1U0U5
LinkDB
All DBs
Position
Unknown
AA seq
524 aa
AA seq
DB search
MSTSGYKPGKRHAVVPLPSVPKETIEFCGCKIPKEYDGKLERTKNSLIIKKGFVPGMLSD
AEMFCNTELFHLLMDELLNEQEGTPFSSCVKQTANVATLPGVVKSLAMPDAHSGYGFSIG
GVAAMRTDKGGCICPGGIGFDINCGVRLLRTNLKESDILPHKIELADSLQKNIPSGVGTT
SSLRLSVKELREVMNDGMEWLATHNYARPDDFLYCEENGKIPDANPLLISQKAMSRGQNQ
LGTLGSGNHYLEVQKVDHIYDKEAAQALGITEIGQICVMVHCGSRGLGHQVCQDFVDTFL
SKNTANPVDKQLTGVPFNSEDGKKYFSAMNAAANFAFANRGFITYHIRQTFSEVFKKSPE
ELDLGIVYDVCHNIAKLEKHVVNGEEVECVVHRKGATRAFPPHRPELPEKYKEIGQPAII
GGSMGTSSYVLVGTQSGMEKSFGSTCHGAGRKLSRVGAMKSVSSDNVVQEMEKKGIVLRI
TDPKLAAEECDEAYKDVTQVVETCQEAGISKIVLRLKPIVVVKG
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgtctactagtggatataaacctggcaagcgacacgcagtggttcctcttccctctgtc
cccaaagagactatagagttctgtggatgtaaaattccgaaagaatatgatgggaaatta
gagcggacaaaaaattcccttattatcaaaaaaggttttgttcccgggatgttgagcgat
gctgagatgttttgtaatactgagttatttcatttgttaatggatgaattgctcaacgaa
caagaaggtacaccattctcttcatgcgtcaaacaaaccgcaaatgtggcaacacttccc
ggtgttgtcaaatctcttgctatgcctgacgcacatagtgggtatgggttttcgatagga
ggtgtagcagcaatgcgtaccgataaaggtggttgtatttgtcccggtggaattggtttt
gatatcaattgtggtgttcgtcttcttcggaccaacctcaaagagtctgacatacttcct
cacaaaattgaattggcagattctcttcaaaagaacatcccatctggtgttggtacgaca
tcttctcttcgtctttcggtgaaggagcttcgtgaagtaatgaatgatgggatggagtgg
cttgcaacgcataactacgctcgccccgacgatttcctttattgtgaagaaaatggtaaa
attcctgatgcaaacccacttttaataagtcagaaagcaatgtcacgaggacaaaaccaa
ttaggtacacttgggtcaggaaatcattatttagaagtccagaaagttgatcatatctac
gataaagaagcggctcaagcacttgggatcactgagattggtcaaatatgtgtgatggtc
cattgtgggagtcgagggttaggccatcaagtttgccaagattttgttgatacctttctt
tccaagaacaccgcaaaccccgttgacaagcaactcactggggttcctttcaacagtgaa
gatggaaaaaaatatttcagtgcaatgaatgctgctgccaattttgcatttgcgaatcgt
gggtttattacatatcatattcgacagacgttctctgaagtttttaagaagtcgcctgaa
gaattggatttaggaatagtatacgacgtctgccataacatcgcgaagttagaaaagcat
gtagtgaatggagaggaggtcgagtgtgttgtccacaggaaaggggcgacccgtgcattt
cctccgcatcgtcctgagttgcctgagaagtacaaagagattgggcaaccagcgataata
ggtgggagtatgggaacgtcgtcatatgtacttgtagggacgcagagtggaatggagaag
tcttttgggagtacatgtcatggtgctggtcggaaactgagtcgtgtaggagcaatgaaa
agtgtttcttctgataatgttgtgcaagagatggagaagaaggggatagttttgcgtata
acggaccccaagttagcggccgaagagtgtgatgaagcctataaagatgttacacaagtt
gttgaaacgtgtcaagaagctgggatttccaaaatagtattacggctcaagcccattgta
gttgtaaaaggctga
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