Entamoeba invadens: EIN_131860
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Entry
EIN_131860 CDS
T04133
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1, putative
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
eiv
Entamoeba invadens
Pathway
eiv03020
RNA polymerase
eiv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eiv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EIN_131860
09124 Replication and repair
03420 Nucleotide excision repair
EIN_131860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eiv03021
]
EIN_131860
03400 DNA repair and recombination proteins [BR:
eiv03400
]
EIN_131860
Enzymes [BR:
eiv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EIN_131860
Transcription machinery [BR:
eiv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
EIN_131860
DNA repair and recombination proteins [BR:
eiv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
EIN_131860
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
V-SNARE
Motif
Other DBs
NCBI-GeneID:
14893324
NCBI-ProteinID:
XP_004261108
UniProt:
A0A0A1UD26
LinkDB
All DBs
Position
Unknown
AA seq
1650 aa
AA seq
DB search
MEAIGMETKRVQQIKFTLMSTEDIKKMAVLEVVKAEEVDDGKPVEGGLSDPRMGPFDKGD
ECKTCRCTRSDCPGHFGYIQLYAPVYNPVYVKYILKVLKCVCPSCHRLYCHDDERLNSLK
SKGEERLKDVYDIIDKDYIQCGKRKDKKGAEKQQQHEEEDRICHSAKVDYELPKSKLENK
LEIRYKGSKAEESKFMPRDALNILKEMTDEDVKILGFDPKYSHPKFMVFEVFPVAPPAVR
PQAVSDKGSRNNKDDLTVMYENIIRANEELKNEQSKVSGINRYDEIFKEVQTICAKVCLK
NVKDLPDNPSKKKYKSIEDRLSGKQGRMRLNLMGKRVDFSARTVISPDPNLSMDEVGVPT
GIAKILTFPEVVTRYNMDKLQSLVNAGMNSYPGAFMLQRKNGETFRLNGGDKILNIGDVV
HRFLMDGDYVIFNRQPSLHRMSMMGHRARVLPFSTFRMNLCDTTPYNADFDGDEMNLHIP
QTLEARAEISVLMMTPTQIITPEKNCPIMGIVQDTQCGSYIITKRQTFIEKLIFYNILQW
LDKLNVTVPIPAILKPKPLWTGKQVFTLILPPINYENGDYSIGTLLKKGPCYDDSKVYIH
KGILVTGYLCNSSGFGKNQSGIVHSIYKDVGMEATKIFFNQTQATVNSWMLTRGFTVGLG
DIVVKQDVHDRIREAVKKSIQNSEKYLDHKHDDEIEPVAGQTMFQNLETKLSLLLSNVKT
ECDKITKDALKKDNNLLQMVDSGSKGSNSNISQMVAFVGKQEINNQRIPFGFYKRTLPHY
WKEDYGFVTRGFCENSFVMGLSPQEVFFHAMAGRQGIIDTAIKTSETGYIQRRLVKSMED
VQCKYDRTVRRTTGDMVEFMYGSDGVDALMCESQKFPYCLDVNKMNDASKTVEQVDEQNM
KKLYQWDFSDPNLKNIVSEDVYMVLLSDECLEATRKEYDNVLNERAELYAASRQMIGVKP
EDVHVVVHFDRQISNVIATSFNPFDKGVDLDPKYVIEQENNLVKRLAEVGVSKTPDAEDK
ERAIDALRPFSYLMHAKLSSKQCILGYRMCKAAFDDLMKRMENIYLHSRVNPGEMIGSIA
AQSIGAPATQMTLNTFHHAGTSEATVTEGVPRLKELLNMSKMPKTPSMTVWLTVDPDEKK
SVLDKELNTKIPFTLLKDLVEKVEIWFDPNLRESVVEEDREFLAEYAEISDINQEKYSKW
TIRMLLGYNKIVAMGIDVDNDNLKKRVSDKFPSCLVIQSDSNHVVDGSVKIVLYIRFPDS
DVARCDSIENLTRALSSDREPVAFHKKMIDQILNDVQISGVVGISKIIIRDKPTPFLVID
PETKLLHEKKQWVIFTEGSNMVGLTQFEEVDFTKTVTNNVYEVYQFLGIEAGRIQLASEF
IKCLSGSYVNYRHLGLLADVMTHTGRVEPVNRMGLSRSHAGVITRASFEQTLEQFRRAAA
FGESDMLNGVSQNVLMGQRTIVGTGAFTVLIDVEKLQRLNVDAEVLDDSEESEDVKAWDG
LMMSPIKQKASVQFSPSRSQLPNKTQMGYQSPIYNTQMGQGFKTSPRPMVTPAMPVQTNT
SSFNKFASPSLGGASPYIIQNASPILFGAAQASPLFRSGPSPYQMSSPQNFASPNFASPQ
LSRPTPPFTQFSPPNDDKSECFVSIVVLFG
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgatagggatggaaacaaaacgcgtccaacagatcaaatttactttaatgtcg
acggaagacatcaagaaaatggcagtgttggaggtagtgaaagcggaagaagttgatgat
gggaaaccagttgagggaggattgagtgatcctcgaatggggccatttgataaaggcgat
gaatgtaagacgtgtcgatgcacccgtagtgattgtcctgggcattttggatacattcaa
ttatatgcgcccgtgtataatcccgtctatgtgaagtacattcttaaagtcctgaagtgt
gtttgtccaagttgtcatcgactgtactgccatgacgacgaacgactcaattcactcaaa
tccaaaggagaagaacggttgaaggatgtctatgatattattgataaagactatatccaa
tgcgggaagaggaaagataagaaaggggcggagaagcaacaacaacacgaggaagaggat
cgcatctgtcattcggcgaaagtcgattacgagctcccgaagtcgaagttagaaaacaaa
ttggagatccggtacaaaggctcgaaagcagaagagagcaaattcatgccaagagatgct
ttgaatatattgaaggagatgactgacgaggatgtgaagatattagggttcgacccaaaa
tattcccatccgaagttcatggtgtttgaagtctttcccgttgcgccaccggcggtacga
ccccaagctgtctctgataaagggagtcggaataacaaagatgacttaactgtgatgtac
gagaacattatacgagcgaatgaagagcttaaaaacgagcagtcgaaggtcagtggtatt
aatagatatgacgaaatcttcaaggaagtccagacgatctgtgcgaaggtgtgtttgaag
aacgtcaaggatttgcctgataatccgtcgaagaagaagtacaaaagcattgaagaccga
ctgtctgggaaacaaggaagaatgcgactgaacttgatggggaagcgtgttgacttttct
gcgagaacagtcatttccccggaccctaacttgtctatggatgaggttggagtgcccacg
gggattgcaaagatattaacatttccagaagtggtcacgcgatataacatggacaaatta
caatcactagtgaatgctggaatgaacagctaccctggtgctttcatgttacaacggaag
aatggagagacatttcggttgaatgggggggataagatattgaacattggagatgtggtc
caccgctttttgatggatggggattacgtcattttcaatcgacagccgtcactgcatcgt
atgtctatgatggggcaccgagcaagggtactgccgttctcgacgttcagaatgaacttg
tgcgacacgacgccgtataatgcggattttgatggtgatgaaatgaatttgcacattcca
cagacgcttgaagcgcgtgcggagatatctgtgttgatgatgactccgacccagattatt
acacctgagaagaactgcccgattatgggtattgtccaagatacacaatgtgggagttat
attattacgaagagacagacgttcatcgagaagttgattttttacaacatcttgcaatgg
ttggacaagctgaatgtgactgttccgataccagcgatcctcaaaccaaaaccgttatgg
acggggaaacaagtcttcacgttgattctgccaccgatcaattatgaaaatggcgattac
tcgataggaacacttttaaagaaggggccgtgctatgacgactcgaaggtgtacatacac
aaaggcattttagtcacggggtacctctgcaattcgtcagggtttgggaagaatcaaagt
gggattgtccactcgatctacaaagatgttgggatggaagcgacgaagatctttttcaat
cagacgcaagcaacggtgaacagttggatgttgacgagagggtttactgttggtctcggg
gacattgtagtgaaacaagacgtccatgatcggattcgagaagcggtgaagaagtcgatt
cagaactctgagaagtacttagaccacaaacatgatgatgagattgaacctgttgctgga
caaacgatgttccagaatttggagacgaagttgagtctgttgttgtcgaatgtgaagacg
gagtgtgataagatcacgaaagacgcgttgaagaaggacaacaatttactgcaaatggtc
gactcggggtcgaaaggaagtaattcgaacatctcgcagatggtcgcctttgtcgggaaa
caagaaattaacaatcagcgtatcccctttgggttctacaagcgaacgttaccacactac
tggaaggaggactacggctttgtcacgcgtggcttctgtgagaacagttttgtgatgggt
ctttcgccacaagaagtcttcttccatgctatggcaggccgacagggtattattgataca
gctattaagacatcagagacggggtatattcaaagaagacttgtcaagagtatggaggat
gtccaatgtaagtacgacagaaccgttcgccgaacgacgggagatatggtggagtttatg
tatgggtctgacggcgttgatgcgttgatgtgcgagtcacaaaagttcccttattgtctt
gatgtgaataagatgaatgacgcgagtaagactgtggagcaggtagacgagcagaatatg
aagaagttgtaccagtgggatttcagtgacccgaatcttaagaacatagtcagcgaagat
gtttacatggtactcttaagtgacgaatgcctcgaggcgacaaggaaagagtatgacaat
gtgttaaatgagcgcgctgaattgtatgcggcatcgcgacagatgatcggagtgaagccg
gaggatgtccatgtggtagtccactttgatagacagatctcaaatgtgattgcgacgtcg
ttcaatccgtttgataaaggcgttgatttagatccgaagtatgtcattgaacaggaaaac
aatttggtgaagcgcttggcggaagttggcgtgtcgaagacgccggatgccgaagacaaa
gaacgtgcgattgatgctttgcgcccattctcgtatctgatgcatgccaaattaagctca
aaacagtgcattttggggtatcggatgtgtaaagctgcgtttgacgacttaatgaagcgg
atggagaacatctatttacactcgcgagtgaatcctggagagatgattgggtctattgct
gcgcaaagtattggagcgccggcgacacaaatgacgttgaacacattccatcacgctggt
acttctgaagcgacggtcacggaaggtgtcccacgtctgaaagaacttttgaatatgtcg
aagatgcctaaaacgccatcgatgacggtgtggttgactgttgatcctgatgagaagaag
agtgtgttagataaagaattgaacacgaagataccatttacattgttaaaggatcttgtc
gagaaggtagagatttggtttgatccgaatttgagggagtcggtggtggaagaagatcga
gagtttcttgccgagtatgcggagatttctgacatcaatcaagagaagtacagcaagtgg
acgattcgtatgttgttggggtacaataaaatagttgcgatggggattgatgttgataac
gacaacttgaagaagagagtctccgacaagtttccgagctgtttggtcattcagtcggac
tccaatcacgtagtcgacgggagtgtgaagattgtattgtacatccgattcccggactcg
gacgttgcgcggtgcgattcgatagagaacttgacacgggcactttcatcggatagagag
cctgttgcgttccataagaagatgattgaccagatcttgaatgatgtgcagatctcaggt
gttgttgggatatcgaagatcattatacgagataagccgacgccgttcttagtgattgat
cccgagacgaagttgttacatgagaagaaacagtgggtgatctttactgaagggtcgaat
atggtgggattgacgcaatttgaagaagttgatttcacaaagacggtgacgaataatgtg
tatgaagtgtatcagttcttggggattgaagctggtcggattcaattagcgtcggaattc
atcaagtgtttgtctgggtcgtatgtgaattatagacacttgggcctccttgcggatgtc
atgacacacacgggaagagtcgagccggtcaatcgaatggggttgtcccgttcacatgct
ggtgttattacacgagcatcgtttgaacagacgttagagcaattccgacgtgctgcggcg
tttggggagtctgatatgttgaatggagtgtcacagaatgtattaatgggacaacggact
atcgtagggactggtgcgttcactgtcttaattgatgttgagaagttacaacgcctgaat
gttgatgccgaagtcttagatgattcggaagagagtgaagacgtgaaggcgtgggatgga
cttatgatgtctcctattaaacagaaagcgtctgtccaattctcaccaagtcgttcacaa
ttgccaaataagactcaaatgggttatcaaagtccaatttataacactcagatgggtcaa
ggctttaaaacatccccacggcctatggtaacaccagctatgcccgtccaaactaatact
tcgtcgttcaataaattcgcatccccgtcactcggtggcgcgtctccttatatcattcaa
aacgcttcacctattctctttggagcagctcaagcttccccactctttagaagcggtccg
tctccatatcaaatgtcaagccctcaaaacttcgcttcacctaactttgcgtcccctcaa
ctgtcaagacctacccctccattcacacaattcagtccacctaacgatgacaaaagtgag
tgtttcgtgtctattgttgtactgttcggttga
DBGET
integrated database retrieval system
