Embiotoca jacksoni (black perch): 138191693
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Entry
138191693 CDS
T10523
Symbol
msh3
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
138191693 (msh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eja03400
]
138191693 (msh3)
DNA repair and recombination proteins [BR:
eja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
138191693 (msh3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Mo-nitro_C
Motif
Other DBs
NCBI-GeneID:
138191693
NCBI-ProteinID:
XP_068994723
LinkDB
All DBs
Position
Unknown
AA seq
1121 aa
AA seq
DB search
MPKAMKKSCTTQTSISRYFGGLSSSSSSLSDNTQRGINQNPGERQLSRGKKLSSDDDDFG
LPTKRAKFSVKDQQLGHLECEPASCQSTKETKLTSSRGAGSLCSSTLEKLKSFICVAEPS
VSHSHTQEETDGASSKICGQERNVWPPCGVSDQRRPTNRLQQAEEECEEEEEEVKEKEGS
GLVATKQGLLLSQFAKSGGGGGAGRAAEPSPLSDSCTSSRRSKSVYTPLEQQVIQLKQQH
KDALLAVECGYKYRFFGEDAEIAAKELNIVCHLDHNFMTCSIPTHRLFVHVRRLVSHGHK
VGVVKQTETSAIKASGANRNALFTRQLSALYTKSTLVGEDVNPVCRLGEVEEGCGDVVSD
PPDSFLLCVSESWDKVKKQLTVGLVAVQPSTGDVLLDYFPDGPSRSELEGRVLKINPVEI
LVPSDLTEQSHRLLQSITNASAQADDRVRVEKRDSAQFEFTAAMNTVTEFYCHTQEKGSR
SLSSVASLESPVICCLGPLIQYLQEFSLERVLRSESSFRRLSCELEGMMLSAATLRNLEI
LNNQTDGSVKGSLLWVLDHTRTPFGRRLMRKWVSQPLTDPQSISERQDAVQEILESHSLT
LNSVRSLLSHLPDLERGICSIYHKKSSTQEFYLISSSLSRLGLELQTLLPAVQSQISSAL
LHSLLLDTPDLLVPAHSFLKVLNEKAAKAGNKLELFSDLSGFPVLQERREQIQTVLSEIQ
DHRKDIRLTLKARALDYTTVSGQEFLIEVKNSLSSTVPPDWVKISSTKAVTRYHSPFLVD
RYKKLLQLREQLLLDCQREWTNFLDQFGERYHTMKRAISHLATMDCLFSLAEVAKQGDYC
RPKVCEDQHQIMIRDGRHPAIDLLMGEHNQYVPNHTELQRDGRRTMIITGPNMGGKSSYI
RQVALICVMAQMGSYVPASEACLGILDAVYTRMGASDNIYKGRSTFMEELTEASEIISRV
TERSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKALTLFVTHYPPLCELERMYPEHVS
NYHMAFLLNEPDISTDTDDEEVQPEFITFLYQLTEGAAGRSYGLNVARLADIPDLILHTA
ARKARELESMVNARRKIKKLLSDLWSISDRSCLLEWLQSNS
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggctatgaaaaagtcgtgcaccactcagacctccattagcaggtacttcgga
ggactgagcagcagcagcagcagcttgtccgacaacacgcagcgtgggattaaccaaaac
cctggtgagcgccagctctcaagaggcaagaaactgtcctccgatgatgatgattttgga
ttgccaaccaaacgagctaaattttctgtcaaagaccagcagctggggcatctggagtgt
gagcccgcgtcctgtcaaagcactaaagagacaaagctaacatcgagccgaggagcagga
agcctttgttcctccaccttggagaagctgaaaagcttcatctgtgtagctgagcccagt
gtcagccacagtcacacacaggaggaaacagatggtgctagcagtaaaatctgcggtcaa
gaaaggaacgtttggcctccctgcggtgtctcagaccaacgcagacccacaaacagactg
caacaggcagaggaggagtgtgaggaggaagaggaggaggtcaaagaaaaggagggttca
ggactggttgctacaaagcaggggctcctcttgtctcagtttgccaagtcaggcggagga
ggaggagcaggaagggctgctgagccgagtcctctgtcagactcttgcacctcctccaga
cgctcaaagagcgtatacactcctctggagcagcaggtcatccagctgaaacagcagcat
aaggatgccttgctggctgtggagtgtggttacaagtacaggttctttggagaagatgca
gagattgctgcaaaagagctgaatatcgtgtgtcatctggatcataacttcatgacgtgc
agcatccccacacaccgcctctttgttcatgtcagacgtttggtgtctcacggtcacaag
gttggtgtggttaagcagacagagacgtctgcgatcaaggcctcaggggccaataggaac
gctctgttcacacgtcagctcagcgccctttacaccaagtccactctggtgggagaggat
gtaaaccccgtctgcagactcggggaggtggaggagggatgtggtgatgtggtgtcggac
cctcccgacagctttctcctgtgtgtcagtgagagctgggataaagtgaagaagcagctc
actgtggggctggtggcggttcagcccagcacaggagacgtgttattggattatttccct
gatggtccatctcgctctgagctggagggccgtgtcctaaagatcaaccccgtggagatc
ctggtgccatctgacctcaccgaacaaagccacagactcctgcagagcatcactaatgcc
agtgctcaggctgatgaccgagtgagagttgaaaagagggacagcgctcagtttgagttc
accgctgcaatgaacacagtcacagagttttactgccacacccaggagaaaggctctcgc
tcgctgtcgagtgtagcatccttagagagcccagtgatctgctgtctggggccgctcatc
cagtacctccaagaattcagcttagagagagtgcttaggagcgagagctcattccggcgt
ctctcctgtgagttggaggggatgatgctcagcgccgccactctcaggaacctggaaatc
ctcaacaatcagacagatggtagtgtgaagggaagtctgctgtgggtgttggaccacact
cgcaccccgtttggaaggagactgatgaggaagtgggtgagccagcccctcacagaccct
cagtcaatctcagagaggcaggatgctgttcaggaaatcctggagtcgcactctctcact
ttaaactctgtcagatccctgctgtcacatctgcccgacctggagagaggcatctgcagc
atataccacaaaaagtcctcgacgcaggagttttacctcattagcagcagtctctctcgc
ctggggctggagctgcagaccttgctcccagccgtccagtcacagatcagctcagcgctg
ctccacagcctcctgctggacactcccgacctgctggttccagcccacagcttcctcaag
gtgctcaatgaaaaggccgccaaggctgggaataagttggagctcttctcagatctgtcc
ggcttcccggtgctgcaggaaagaagggagcagatccagactgtcctcagtgagattcaa
gaccaccgcaaagacatccgactgacgctgaaggcccgcgcacttgactacacgaccgtc
tctggacaggagtttctgattgaggtgaagaactccctgtcatccactgttccacctgac
tgggtcaaaatcagcagcaccaaggcagtcaccagatatcactctcctttcctcgtcgac
cgctacaagaagctgctgcagcttcgagagcagctgctgctggactgccagagggagtgg
accaattttctggatcagtttggggagcgctaccacaccatgaaaagggctattagtcac
ctagcaaccatggactgcctcttctcattggctgaggtggctaaacaaggggactattgc
aggccaaaggtgtgtgaagatcagcaccagattatgatcagggacggcagacatcctgct
atagacttactgatgggagagcacaaccagtatgtgcctaaccacactgaactacagcgt
gatggcaggagaactatgatcatcactgggcctaatatggggggtaagagctcctacatc
cgccaggttgccctcatctgtgttatggctcagatgggctcctacgtcccggcctccgag
gcctgtctgggcatactggacgccgtttacaccaggatgggggcttcagacaacatctac
aaaggtcgcagtacgttcatggaagagctgacagaggcgtcggagatcatttcccgagtg
acagaacgctcgttggtcatccttgatgaactgggacggggcacaagcacccatgatggg
atcgccattgcctatgccaccctggaatacttcatcagagatgtgaaagccttaaccctg
tttgtcacccactaccctcctctgtgtgagctggagcggatgtatcctgagcacgtgtcg
aactaccacatggctttcctgcttaatgaacctgatatctccactgatacagatgatgaa
gaggttcagccagagttcatcaccttcctctaccagttaactgaaggagctgcaggacgg
agctacggcctgaatgtcgcccggctggctgacatcccagatcttatactacacactgct
gcacggaaagcccgagagctggagagcatggtcaatgccaggaggaaaatcaagaaactt
ctctcagatctgtggagcatctcggacagatcgtgtctcctggagtggctgcagtcaaac
tcctga
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