Embiotoca jacksoni (black perch): 138192133
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Entry
138192133 CDS
T10523
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
eja Embiotoca jacksoni (black perch)
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eja03016
]
138192133 (rtcb)
Enzymes [BR:
eja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
138192133 (rtcb)
Transfer RNA biogenesis [BR:
eja03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
138192133 (rtcb)
Prokaryotic type
tRNA splicing ligases
138192133 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
138192133
NCBI-ProteinID:
XP_068995457
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKLSGNSWRIKKGFVPNMQVEGIFYVNEPLEKLMFEELRNACRGGGIG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMNNPDAVVSPGGVGFDI
NCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFATTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagttacaacgacgagctgcagttcctggaaaaactgtccgggaacagctgg
aggatcaagaagggcttcgtgcccaacatgcaggtcgaaggaatcttctacgtcaacgaa
cctctggagaagctgatgttcgaagagcttcgtaacgcctgtcggggaggaggtatcggc
ggattccttcccgccatgaaacagatcgggaatgtggcggcgctgcccgggatcatccac
agatccatcggcctcccggacgtccactctggttacggcttcgccatcggaaacatggcg
gccttcgacatgaacaacccagacgcggtcgtgtcgccgggcggcgttggtttcgacatc
aactgcggcgtccgcctgctgaggacgaacctggacgagcgagacgtccagccggtgaag
gagcagctcgcccagtcgctgttcgaccacatcccggtgggcgtcggctccaagggggtc
atccccatgggggccaaggacctggaggaggcccttgagatgggggtggactggtctctg
agggagggctacgcgtgggccgaggacaaggagcactgtgaggagtacggccggatgctg
caggccgaccccaacaaggtgtcgtccaaggccaagaagagaggcctgccgcagctggga
actctgggagcaggaaaccactacgctgagatccaggtggtggacgagatctacaacgac
tacgccgccaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagc
ggcagccgggggctcggccaccaggtggccacagacgcgctggtcgccatggagaaggcg
atgaagcgggacaagatcacggtgaacgaccggcagctggcctgcgcccgcatcacctcc
caggagggtcaggactacctgaaggggatggcggccgccgggaactacgcctgggtcaac
cgctcctccatgaccttcctcacccgacaggcgttctccaaagtgttcgccacgacgccg
gacgacctcgacatgcacgtcatctacgacgtgtctcacaacatcgccaaggtggaggag
cacatggtggacgggaagcagaggacgctgctggtccaccgcaaaggatccacccgggcc
ttcccgccgcaccacccgctcatccccgtcgactaccagctcacaggtcagccggttctg
atcggagggacgatgggaacctgcagctacgtcctgacggggacggagcagggcatgacg
gagacgttcgggaccacctgtcacggagcgggtcgcgcgctgtctcgagcgaagtcccgc
cggaacctggacttccaggacgtcctggacaagctggccgacaaaggcatcgccatccgg
gtggcgtcgcccaaactggtgatggaggaggctcccgaatcgtacaaaaacgtgacggac
gtcgtcaacacgtgtcacgacgccggaatcagcaagaaggcgatcaagctgaggccgatc
gccgtgatcaaaggctga
DBGET
integrated database retrieval system
