Embiotoca jacksoni (black perch): 138193270
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Entry
138193270 CDS
T10523
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja04510
Focal adhesion
eja04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138193270
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138193270
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
eja00536
]
138193270
Glycosaminoglycan binding proteins [BR:
eja00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138193270
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
138193270
NCBI-ProteinID:
XP_068997304
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MFGFVDSRTVLLLVASQVVLLSVVRCQKEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADASAPIETIGAKGQKGEPGDIADVVG
PKGPPGPMGPSGEQGPRGEGGAKGDKGNPGPRGRDGEPGTPGNPGHAGPPGPPGLGGNFA
AQMNAGFDEKARSVHMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGETGEPGPAGPMG
PRGPSGPSGRPGSDGEGGKPGKAGERGPSGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGEGGSSGENGSPGPMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPHGPVG
PAGAPGFPGSPGAKGEAGPTGARGAEGAQGPRGEGGTPGSPGPAGASGNPGTDGIPGAKG
SAGGSGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPAGPLG
APGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVSGAAG
PKGGTGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGESGKPGEKGLLGRTGLRGLPGKDGETGAGGPSGPAGPAGERGEQGQPG
PSGFQGLPGPSGTPGEAGKPGDQGVPGEGGVPGAVGPRGERGFPGERGGAGTQGLQGPRG
LPGTPGSDGPKGAIGPAGAAGVQGPSGLQGMPGERGTGGIPGSKGDRGDNGQKGPEGAPG
KDGARGLTGPIGPPGPGGPNGAKGETGLTGPNGAAGTRGAPGDRGEVGPPGPAGFAGPPG
ADGQPGAKGELGEGGQKGEAGSSGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGSPGPNGNPGSVGPAGSVGKDGPKGVRGDSGPSGRQGDTGLRGPAGQHGEKGVPG
AKGEAGVDGPPGPQGLGGPHGIVGLPGQRGERGFAGLLGPSGEPGKQGSPGSGGDRGPPG
PVGPPGLTGPAGETGREGTPGSDGPPGRDGALGTKGERGNTGPAGAPGAPGSLGAPGPVG
PLGKQGDRGESGSQGPAGPSGPGGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQG
LPGPPGPAGDSGSAGPAGPSGAKGPSGPGGPAGKDGSNGQPGPIGPPGARGRSGESGSAG
PPGNAGPPGPPGPPGPGIDMSAFASMGQTEKSTDPLRYMRADEASSSLRQHDVEVDSSLK
SLNNQIENLRSPDGSQKNPGRTCRDLKLCHPEWKSGDYWIDPNMGSNADAIKVFCDMETG
ETCVYPSIAKAPKKNWWTSKSKDRKHIWFGETMNGGFHFNYAQDGPAANAASVQLTFLRL
LSTEASQNVTYHCKNSIAYMDQATGNLKKALLLQGSNDVEIRAEGNSRFTYAVLEDGCKR
HTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGTVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcagaaagaggatgaccaggaggcaggtggctgcatccaggac
ggccagcagtataatgataaggatgtgtggaagccagagccgtgtcgtatctgtgtgtgc
gacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gagacaattggtgcaaagggccagaaaggagaaccaggagatattgcagatgttgttgga
ccaaaaggaccgccaggccctatgggcccctcaggtgagcagggaccacgaggagaaggt
ggcgccaagggtgacaagggaaatcctggacctcgaggaagagatggtgagcctggcacc
cctggaaaccccggacatgccggcccacctggacctcctgggcttggagggaactttgct
gcccagatgaacgcaggttttgatgagaaggccagaagtgttcacatgggtgtgatgcag
ggaccaatgggtcctatgggtccccgtggtccccctggacctagtggagctcctgggcca
cagggtttccaaggttcccctggagagaccggagagcccggtcccgctggaccaatggga
cctcgtggaccatccggaccttctggaagaccaggaagtgatggtgaaggtggcaaacct
ggcaaagctggtgagcgtggaccttcagggcctcagggagctcgcggattccctggaact
cctggacttcctggcatcaaaggacacagaggtcatcctggtctggatggagctaaggga
gagaccggtgctgcaggagccaagggtgagggtggttcttctggagaaaacggttcccct
ggaccaatgggcccacgtggtttgcccggtgagaggggacgtcccggagctgctggagct
gcaggtgcccgtggaaatgatggcttgcctggtcctgctggtccacatgggccagttggt
cctgctggagctcccggtttcccaggatccccaggagccaagggagaagctggccctact
ggtgcccgtggagctgagggagcacagggaccccgcggagagggtggtaccccaggatct
cccggacccgccggagcatcgggtaaccccggtactgatggtattcctggagctaaagga
tctgctggtggttctggtattgctggtgctcctggattccccggcccccgtggaccacct
ggaccacagggagcaacaggacctctggggcccaaaggacagtctggagaccctggtctt
cctggattcaaaggtgaagcaggacccaaaggagagcttggacctgctggtcctctaggt
gcccctggccctgcaggagaagaaggaaagagaggcgctaggggagagcctggtgctgct
ggaccactcggacctccaggagagagaggagctcctggtaaccgcggtttccccggtcag
gatggtcttgctggcgctaagggtgcccccggtgaccgtggtgtttctggcgctgctggg
cctaaaggtggtactggagaccctggacgcacaggagagtctggcctccctggagccaga
ggtcttactggtcgtcccggagatgcaggtcctcagggcaaagttggaccctctggtgcc
tccggtgaggacggtcgccccggcccacctggtcctcagggagcccgtggacagccagga
gtgatgggattccctggaccaaagggagccaatggtgaatctggaaagccaggagagaag
ggtcttttgggtcgtactggtctcagaggtctgcccggaaaagatggtgagactggtgct
ggtggaccttctggccctgctggcccagctggagagagaggagagcaaggacagcctgga
ccttctggcttccagggtctgcctggaccttctggtaccccaggagaggctggaaaacct
ggagaccagggtgttcctggagagggcggagttcctggtgctgttggacctagaggtgag
cgtggtttccctggtgagagaggtggtgctggaacccagggtctacagggacctcgtgga
cttcctggaactcctggaagtgacggacctaagggagctattggaccagctggtgctgct
ggagtccagggaccctcaggcctgcagggtatgcctggagagagaggaaccggtggtatc
ccgggatccaagggagacagaggtgacaatggacagaagggacctgaaggtgctccagga
aaggacggtgctagaggtttgactggtcccattggtcctcctggcccaggtggacccaac
ggtgccaagggagagactggacttactggccctaatggtgctgctggtactcgtggtgcc
cctggtgaccgtggggaggtcggtcctcctgggcctgctggctttgctggacctcctggt
gcagatggtcagcctggtgccaagggagagctcggtgagggcggacagaagggagaggct
ggttcttctggaccccagggaccatctggagctcctggacctgtgggacctactggtgta
tctggacctaaaggagcacgtggtgctcagggagctcctggtgctacaggtttccctggt
gctgctggcagagttggatctcctggtcctaatgggaaccctggcagtgttggtcctgct
ggctctgttggtaaagacggaccaaagggtgttcgcggtgattccggtccttcaggaaga
cagggagacactgggctccgtggacctgctggccaacatggagagaagggagtgcccgga
gcgaaaggagaagctggtgttgatgggcctccaggtcctcagggtctgggtggaccccat
ggtattgttggtctgcccggtcagcgtggagagagaggcttcgctggtctccttggacct
tctggagagcctggtaaacagggatctcctggctccggtggtgaccgtggacctcctgga
cctgttgggccccctggacttactggacctgctggagagactggcagagagggaacccct
ggatcagatggaccccctggtagggatggagctcttggaaccaagggagagcggggtaac
accggtcctgctggcgcccccggagctcccggttcccttggtgcccctggacctgtcgga
cccctcggcaagcagggagacagaggagagtctggttctcaaggacctgccggaccttct
ggaccaggtggcgcaagaggaatggctggaccccaaggaccacgtggagacaaaggagag
gccggtgagactggagagaggggacagaagggtcaccgtggcttcactggtctgcagggt
cttcctggacctcctggtcccgctggagattctggatctgccggacctgctggaccaagc
ggcgctaagggaccttctggaccaggcggacccgctggcaaagatggatccaatggacag
cccgggcccattggaccccccggagctcgtggacgctctggagaatctggttctgctggt
cctcctggtaacgccggaccccctggtcctcctggcccacctggccccggcatcgacatg
tctgccttcgctagcatgggtcagactgagaagtccaccgatccccttaggtacatgagg
gctgacgaggcctccagctctctgaggcagcacgacgttgaggtcgattcctcactcaag
tccctcaacaaccaaattgagaacctgcgcagccccgacggctcccagaagaacccgggt
cgcacctgcagagacctcaaactgtgccaccctgagtggaagagcggcgactactggatt
gatcctaacatgggcagcaacgctgatgccattaaggtcttctgtgacatggagaccgga
gagacctgcgtctacccgagcattgccaaggcaccaaagaagaactggtggaccagcaag
agcaaggaccgcaaacacatctggttcggagagaccatgaacggaggattccacttcaac
tacgctcaggacggccctgcggccaacgctgccagcgtccagctgaccttcttgaggctt
ctgtccactgaagcctcccagaacgtcacgtaccactgcaagaacagcatcgcctacatg
gaccaggccacgggcaacctgaagaaggctttgctgctgcagggctccaacgacgtggag
atccgcgcagagggcaacagtcgcttcacctacgccgtgttggaggacggctgcaagaga
catacaggccggtggggcaagaccgtcttcgagtacaaaacacagaaaacctcccgtctg
ccaatcgtggacattgctcctatggacatcggaggagcggatcaggagttcggagtggat
gtaggcacggtctgcttcttgtaa
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integrated database retrieval system
