Embiotoca jacksoni (black perch): 138193907
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Entry
138193907 CDS
T10523
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138193907 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eja03019
]
138193907 (smg7)
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
138193907 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
138193907 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
138193907
NCBI-ProteinID:
XP_068998304
LinkDB
All DBs
Position
Unknown
AA seq
1192 aa
AA seq
DB search
MNLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQSNTSAIVTPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK
SKWSVSDFIRAFIKFHGHVYLSKSLDKVDALREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRDLTADGGEQSYSSEQQISWFQLLGLFMSFLGVMCSRVLLNKNRGEEIMGECP
LPAIKVSLDWLKLRPSVFHEAAVDKRQHIWPWLVSILNSFQPKEDDVSCSSVTPLPEEFE
LQGFLALRPALRCLDFTKGHQGILVDRDGLPVHARHQRLISLGKWVADNQPGLIQCRVSE
DGLLVFITDIPEQAIVEPQEKEVPVLQESSNGEQTANDGGNAGLKSVLSAGKTQSSWPDG
GDRPVVTFKENIKPREQSREPTRNHHQKDVGKERRDFCKGNGAAGKGDLKRDGKRKSELK
KTGHEKTADAGKLVKAQTELRKTPVSEAKKTPVTQAQTTCSSQFIPIHHPGAFPPLPSRP
GFPPSAYVIPPQVGFPGLQVNPGFTFSTGVSVPGPFLQPTVHTQAGGQVQAGKQSHIPYS
QQRPSGPGPSGQGPMSQGPSQGQPPQGQAPSQQALQQSVQLQVQAMSQQQQSPTKPVQQV
GMGKSPPHHPGLQQYMQEQPAQMWNQAQAALQKLSPMQISMKQPQQQQQQAFYMAAQDPM
KMYEHQLQPPAQPQHPNMDKKMKYPDVKMQDFYWEPSYRMGDGLAVMADRMKRPPPGGIC
PEQEVPAGPRGPPFEDNKSSPLLPPDLLKTLADFEEEEELVFTKPPDFFQALAGPLSTAP
GPNIFLPNQTRMESGPEVGGQSSSLLPMSGFPMQEYNQNSIFSQAYGKNLPPSSKPDAPM
VHQEPSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGAMPFSNFG
PIGTPDSRDRRVVDRWKADKTGAVSGFGLDYLPAAASSAASDNSWHQAGPTGSSWTNQES
PMEESSSTVLLDSFKSIWSSSMMQPGPSALEQLLLQQKQKQQRGHGTMNPPH
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccagtatcttcgacaggcagaggccctgaaggctgacatgacagat
tcgaagctgggggcggcagaggtgtggacgtctcggcaggccctgcaggacctctaccag
aagatgctggtgacagatctggagtacgctctggacaagaaggtggagcaagacctgtgg
aaccatgcttttaagaaccagatcacgacgctgcagagccaggccaagaaccgggccaac
cccaaccgcagcgaggtccaggccaacctgtcgctgtttctggaggcagctagcggcttc
tacacgcagttactgcaggagctgtgcactgtgttcaacgtggacctgccctgccgcgtc
aaatcctctcagctcggcatcatcagcaataagcagagcaacaccagcgccatcgtcacc
ccacagcccagctcctgctcctacatctgccagcactgcctcgtccatctcggagacatc
gcacgttatcgtaaccagaccagccaggccgagtcttactaccgacatgcagctcagctg
gttccatcgaacggtcagccctacaaccagctggccatcctggcctcctccaaaggagac
cacctcaccaccatcttctactactgccgcagcatcgcggtcaagttcccgttcccggcc
gcctccaccaacctgcagaaggctctgtccaaggctctggagagtcgcgatgaggtgaaa
tccaagtggagcgtgtcggatttcatcagggccttcatcaagtttcacggtcacgtctac
ctgagtaagagtctggacaaagtggacgctctgagggagaaactggaggagcagtttcag
aggctgattctgcagaaggccttcagctcccagcagctggtccacatcaccgtcatcaac
ctgtttgagctccaccacctcagagacctgacggccgacggcggcgagcagagctacagc
agcgagcagcagatcagctggttccagctgctcggcctcttcatgtccttcctgggtgtg
atgtgcagccgcgtcctgctcaacaagaaccggggggaggagatcatgggggagtgtccc
ctgccggccatcaaggtgtctctggactggctcaaactgagacccagcgtcttccacgag
gccgccgtcgacaagaggcagcatatctggccctggctggtgtccatcctcaacagtttc
cagcccaaagaggacgacgtgtcctgttcatcagtgacgcccctgccagaggagtttgag
ctgcagggtttcttggctctccggcccgctctgaggtgtctggacttcaccaaaggacac
cagggcatcctggtggacagggacggcctgccggtgcacgcccgacaccagagactcatc
agtctgggcaaatgggtggcggacaaccagccggggctgatccagtgccgcgtgagcgag
gacggcctgctcgtcttcatcaccgacattcccgagcaggccatcgtggagccgcaggag
aaggaggtgccggtgctgcaggagtcgtccaacggcgagcagacggccaacgacggcggc
aacgcgggcctgaagtcggtgctgtcggcggggaagacgcagagctcgtggcccgacggc
ggcgaccggcccgtcgtcaccttcaaggagaacatcaaacccagagagcagagccgcgag
cccacgcggaaccaccaccagaaagacgtcggcaaggagcgccgggacttctgcaagggc
aacggggccgccgggaagggagacctgaagcgggacggcaagaggaagagcgagctgaag
aagacgggtcacgagaagacggccgacgccggaaagctggtgaaggcgcagacggagttg
aggaagactccggtgtccgaggcgaagaagactcccgtcactcaagctcaaaccacctgc
tcgtctcagttcatccccatccatcaccccggagccttcccaccgctgcccagcaggcct
ggcttccccccctcagcctacgtgatcccgccccaggtggggttcccggggctgcaggtg
aatccgggcttcaccttctccaccggggtgtccgtccccgggcctttcctccagccgacc
gtccacacgcaggcgggcgggcaggtccaggcggggaagcagtcccacattccctacagc
cagcagaggccgtcggggccggggccctcgggtcagggacctatgagccagggcccctcc
caaggtcagccgccgcagggccaggcgccttcccagcaggccttgcaacagtcggtgcag
ctgcaggtccaggcgatgagtcagcagcagcagtcgcccaccaaaccggtgcagcaggtc
gggatggggaagagtccaccgcaccacccgggactgcagcagtacatgcaggagcagccg
gctcagatgtggaaccaggcgcaggcggcgctgcagaagctctctcccatgcagatatcc
atgaaacagccgcagcagcagcagcagcaggccttctacatggcggctcaggatcccatg
aagatgtacgagcaccagctgcagccgcccgctcagccgcagcaccccaacatggacaag
aagatgaagtaccccgacgtcaagatgcaggacttctactgggagccctcgtacaggatg
ggcgacggcctggccgtgatggccgacaggatgaagaggcctccgccgggcggcatctgt
ccggagcaggaggtccccgccgggccccggggacccccgtttgaggacaacaagagctcg
cctcttctacctcctgacctgttaaaaactctagcagattttgaggaggaggaggagctc
gtctttactaagcctcctgatttcttccaggccctggctggccctcttagcactgctcct
ggaccaaatatatttctgccaaaccagaccaggatggagagcggccccgaggtcggcggc
cagtcgtcttctctgctgcccatgtctggcttcccgatgcaggagtacaaccagaacagc
atcttcagtcaggcctacggcaagaacctgccgcccagctccaagcccgacgctcccatg
gtgcaccaggagccgtcgctctactcgctgttcgaagggaccccgtggtccccgtccctc
cccgccagctcagaccactccaccccggccagccaatcccctcactcctccaaccccagc
agcctgccgtcctccccgccgacgcacaaccacggagccatgcccttctctaacttcggg
cccatcggcactccggacagccgggaccgcagggtggtggaccgctggaaggccgacaag
accggagcggtcagcggcttcggcctcgactacctgccggccgccgcctcctccgcggct
tcggacaacagctggcaccaggccggaccgaccggcagctcctggaccaatcaggagtct
ccgatggaggagtcgtcctccaccgtgctgctcgacagcttcaagtcgatctggtcgagc
tccatgatgcagcccggcccgtcggcgctggagcagctcctcctgcagcagaagcagaag
cagcagcggggtcacggcaccatgaacccgcctcactga
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integrated database retrieval system
