Embiotoca jacksoni (black perch): 138195289
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Entry
138195289 CDS
T10523
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138195289 (col17a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138195289
NCBI-ProteinID:
XP_069000674
LinkDB
All DBs
Position
Unknown
AA seq
1765 aa
AA seq
DB search
MDELTREMDFSGERVVTETITSTTRLASLPPKGTSGSNHRNMSSSAGGLGLEKNVLTQNS
SGTYFSSSSVGVNTGGYSSSSGIYLGGDSSGGGEGGGSYLNGEGYRGGGKGGGGGGGGSY
LVSSVSKVRSSSSGGARRVQTAGSSGGLSPAFRERKTISSHSGGYDGSSSANSSPEFTRK
DYGNYCSGSTRGRSESRESEIRARLQSASPTACRWTELDDVKKLLKGRSTSVSPTRSSNA
SITLPVPKKATVQTKTISTASQSVSTSYGSGVRSGAFNTIDISSLYDTSLTSGQVDTGVR
SGQYDASLKSGQYDTGLRSGQYDTGLRSGQYDITLKSGQYDTGVKSSQYDASLKSGQYDS
SLKSGQYDTGVRSGQYDTLDAALPSLSWSTTTLPSSSTTVVAGNTSSYTYQAGQAGTNNM
SGGSSLLNPISPPSLSVYGFQNNLAPASGSVLTTSGANVNANLGVTGYGVQKNVSNGGAV
ISTGVSSTTRSQTDDAFKRDYKFLVLEKENAPVRRDTELLILAKDSGKQFTTNSSSVHVG
GSLSGDSIKKEKLISSYSETAPLKTETANSYYGSSGVVMKDKATYAEIRRDSGVFGGGGF
CCCSDSCCSWWKWLLGLLLLSLLLLGLLFGLIALAEDVRKLKNRVTTLEAESSVASARTS
YGVGAGGGAGGGGVAAGVGAGGGAGGGGAAAGVGAGGGAGGGGAAGGVGAGGGAGGGGAA
AGVGAGGGAGGGGVATRGGAESGSVATRVGAEGGGVATTGGAGGGGVVTGVSDAALRIVI
QNMLRTEMQSQEFKVHGGRGLPGPKGDTGSKGDHGFPGTPGAPGAIGHAGPEGPKGQKGT
QGDHGLDGQPGIRGHEGPSGPRGEPGPSGFGMKGSHGDPGIPGSVGAVGAPGPKGDQGLS
GPLGHPGSQGFRGEAGPPGSKGDRGLAGFQGLKGETGDKGSRGLPGDSGIPGPPGSGGEK
GSKGSMGPHGQEGAKGSRGEQGPAGPPGIRGAAGPPGDAALPGTPGLQGPPGMPGNPGQP
GAKGETGSAGRIIDSTGSTSIGIPGPPGPAGPSGPAGPPGLSGPIGPAGLPGQAGPKGDR
GYKGEQGEAGITVRTSENTLTTAERYSAASALPGPPGPPGPPGRPGDSRQGPPGPPGPAG
QPGYGRPGPKGDRGDSGLTSSSGTFYSGPPGPPGPSGPKGSSGSPGLRGYQGEPGLPGQP
GTPGRPGDSDRVSTHFGGHAIPGPPGPPGPRGHPGPQGFKGETGTPGTPGLSRGSVSVSS
GLPGPPGPAGPPGQPGSFSSSVEMRQYITDYLGRISQSGIPGPPGIPGPPGIPGTFSGSL
EDISSRIIAYLRRSDSGFNFGGQGPPGPAGPPGPASGSLSVTALISMLQRDDVRRYMSGP
PGPQGPPGPPGTSGGLSGHYRVEDVATYVFNIMNERGIARGPPGPRGPTGPAGPSGGGRS
DSSVATIDYSVLMRTPAFQSWLSSTVQQGRPGSPGSPGARGLPGPPGPQGPAGSSSTTVY
GGRSQGYSMEDIQHYLQGSGFRGLQGPPGPPGPQGPPGGHSGSVSFGGNLHRESIRTEIQ
QYLSSDNVRRAIVGPPGSPGPRGLKGERGEPGNIQSYTQSQSYSQGDARYASGRADIDVS
KLTEVLDYSNVAMKVTDYIKNRGLLQDYLGEAHFKANVRAIQGPPGPPGPPGPVGYSRVI
GSYGNVTSDLMEFFRTYGTIPGPPGGPGPKGDRGYPGPRGEKGDSGPQGLIGIPGTYAIQ
IPSRLQKRDTAAAGSKVADRRQGRR
NT seq
5298 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaagggagatggacttctcgggagaaagggttgtgacagaaaccata
acctccacaaccagactggcttctctcccaccaaagggaaccagcggatcaaatcacagg
aatatgtccagcagtgctggagggctgggcttggagaagaatgtcttaacccagaacagc
agtggaacttacttctcttcatcctctgtaggtgtgaacaccggtggctacagctcctcc
tcaggaatctacctcggaggagactcctcaggaggaggcgagggtggagggagctactta
aatggagaagggtacagaggtggaggaaagggaggaggaggaggaggaggaggcagttat
ctcgtgagctctgtgtcaaaggtcaggtccagctcttcgggtggtgccaggagagtgcag
actgctggctcatcaggaggcctgtcgccagctttccgggagaggaagaccatatccagc
cactcaggaggttatgatgggagttccagtgctaattcctctccagaatttacacgcaaa
gattatggaaactattgctctggcagcacaagagggaggagcgaaagcagagagagcgag
atcagagccagattgcaaagtgcctcccccactgcctgcagatggacggagctggatgat
gttaagaagctgctgaagggacgctccaccagcgtcagccccacccgctcctccaacgcc
tccatcaccctgcctgtccctaagaaagccacggtgcagaccaagaccatctcaacagca
tctcagtcagtttcaacttcctatggctctggtgtgagatcaggcgccttcaacaccatt
gatatatcaagcctgtatgataccagtctgacatctgggcaggtcgacactggcgtccga
tcaggccagtatgatgcgagtctgaaatcgggacagtatgatactggtctgaggtcagga
cagtatgatactggtctgaggtcgggacagtatgatatcactctgaaatcagggcagtat
gatactggtgtcaaatcgagccagtacgatgcgagtctgaaatcgggacagtatgatagc
agtctgaaatcagggcagtatgatactggtgtgagatcaggtcagtatgacacgctggac
gctgcacttccctcgctttcttggtccactaccacgctgccctcctcctccaccacggtc
gtcgctggcaacaccagcagctacacgtaccaggccggccaggccggcaccaacaacatg
tcgggaggctcgtcactgctcaaccctatctcacccccgtccctgtcagtttacggcttt
cagaataatctggctcccgcctctggcagcgtgctcaccaccagtggcgccaacgtgaat
gcaaacctcggggttacaggatatggcgttcagaagaacgtgtcaaatggcggcgccgtc
atcagcactggagtttcttcaaccaccagatcccaaactgatgatgcctttaagagagac
tacaagttcctggtcttagaaaaagagaatgctccagtgaggagggacacagaactgctc
attttggcaaaagacagcggaaagcagttcaccaccaacagcagcagcgttcatgtagga
gggtcactgtcaggagattcaataaagaaggagaagcttatatcaagctacagtgagacg
gccccattgaagacagagacggccaactcttactatggatcctctggagttgtaatgaaa
gacaaagccacctacgcagagattcgcagggacagcggcgtcttcggaggcggaggattc
tgctgctgctctgactcgtgctgctcctggtggaagtggctgctgggactcctcctcctc
tccctgctcctgctgggactcctgtttggcctcattgcactggctgaggacgtgaggaag
ctgaagaaccgagtgacgaccctggaggctgagtcttcggtcgcctctgctcgcaccagt
tatggagtcggtgctggaggtggtgctggaggtggcggtgtagctgctggagtcggtgct
ggaggtggtgctggaggtggcggtgcagctgctggagtcggtgctggaggtggcgctgga
ggtggcggtgcagctggtggagtcggtgctggaggtggtgctggaggtggcggtgcagct
gctggagtcggtgctggaggtggcgctggaggtggcggtgtggctactcgaggcggtgct
gaaagtggcagtgtagctactagagtcggtgctgaaggtggcggtgtagctactacaggc
ggtgctggaggtggcggtgtagttactggagtcagtgatgctgctcttcggattgtcatc
cagaacatgttaagaactgaaatgcagtcacaagaattcaaagtgcatggagggagagga
ctgcctgggcctaaaggggacactggatccaaaggagatcatggtttccctggaactcca
ggtgctccgggcgcgattggacatgcaggccctgagggtccgaaaggacagaaaggaacc
caaggtgatcacggactggatgggcagccaggtatcagaggtcatgagggcccttctggg
cccagaggtgaaccaggaccatcgggcttcggcatgaaaggttctcacggagatcctggg
attcctggttctgtgggagctgtcggcgcccccggacccaaaggcgatcagggactttct
gggccactaggtcatccaggttctcagggtttccgtggcgaggcagggccacctggatct
aaaggtgacagaggacttgctggatttcaaggacttaaaggtgaaactggtgacaagggt
tccagaggtctgccaggtgattctggtattccaggcccgccagggtcaggtggagaaaaa
ggctccaaaggatctatgggaccccatggacaagagggtgcaaaaggatcaagaggtgaa
caaggacctgccgggcctcctggaatcagaggtgctgccgggcctcctggagatgctgca
cttccaggaacacctgggcttcaaggaccaccaggaatgccagggaacccaggacaaccc
ggtgctaaaggcgaaaccggctcagcaggaagaatcatcgactcaactggctccacttct
attggcatcccaggaccgcccgggcccgccggtccttccggccctgcgggacctccagga
ttatcaggtcccattggtcctgctggtctgcctggccaggctggtcctaaaggagacagg
ggatacaagggagagcagggagaagcgggaataacagtgagaacgagtgagaacacgttg
accacagcagagaggtactccgcagcctcggcactgcctggaccacctggtccccccggg
cctcccggacgtccaggagactcaagacaaggacccccaggaccgcccgggcccgcgggc
cagccaggttacgggagaccaggacctaaaggagacagaggagactcaggcttgacatcc
agctctggaacattttattccggacctccaggaccacccgggccttcagggcccaaagga
tcatcaggttctcctggactgagaggataccaaggtgaaccgggcctgccaggtcaaccc
gggactccgggaagaccaggggactcggacagagtgtcgacacatttcggaggacacgcg
atccccggaccaccgggtccaccggggcctcgtggacatccaggaccgcagggattcaaa
ggggaaactggaactcccgggacaccaggcttatcaagaggctcagtctcggtctcttca
ggtttacctggtccaccgggtcctgctggccctccaggccagccaggctccttttcttct
tctgtcgagatgcgccagtacatcactgactatctcggcagaataagccagtctggtatc
cctggacctccaggtatacccgggcctccaggaatccctggaaccttctcaggctctttg
gaggacatctcgtctcgtatcattgcatacctgcgacgttcagactcggggttcaacttt
ggtggtcagggtcctccaggaccagctggtcctcctggacctgcctctggatccctgtca
gtcactgctctcatcagcatgctgcagagagacgacgtgaggagatatatgtcaggaccg
ccaggtccacagggaccaccgggaccaccggggacatcaggaggactttcgggccattac
agagtggaggatgtcgccacgtacgtcttcaatatcatgaatgaaagagggattgccaga
ggtccacccgggccacgtgggcccactgggcctgccgggccttccggcggcggacgctcc
gactccagcgtggctacgattgactactccgtactgatgagaactccagccttccaatca
tggctcagttctacggtgcaacaaggacgtcccggttctccaggttctccgggtgcccgg
gggctcccgggcccgccgggccctcaggggccagcaggaagctcctcgaccactgtgtac
ggagggagaagtcagggttacagcatggaggacattcagcattatctgcagggttctggg
ttcagaggtctacagggtcctcccggacctccgggtccacagggaccgccaggcggtcac
tctggatcagtctccttcggcggaaacctccatcgcgagagcatccgcactgaaattcag
cagtatctgtccagtgacaatgttcgtcgcgccatcgtcggacctccggggtctccgggt
ccgaggggcctgaagggagaacgaggagagccaggtaacatccagagctacacgcagagc
caaagctactctcagggcgacgctcgctacgcctccgggcgcgcggacatcgatgtcagc
aagctcacggaggtcctggactactccaacgtcgccatgaaggttaccgactacatcaag
aatcgaggcctgctgcaggactatctgggcgaggcccacttcaaggcgaacgtacgagcc
attcagggcccgcccggcccgcccggccctccgggaccagttggctacagtcgcgtcatc
ggttcctacggcaacgtcacatctgacctcatggagttcttcagaacttacggcaccatc
cccggaccgccgggaggccccggacccaagggggacagagggtacccgggacccagagga
gagaagggtgattccggaccccaaggtttaatcggaataccgggaacatacgcgatccaa
attccatccagactgcagaagagggatacagccgctgcaggcagtaaagtggccgatcgt
cggcagggtcgccgttaa
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