Embiotoca jacksoni (black perch): 138195475
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Entry
138195475 CDS
T10523
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
138195475 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eja03400
]
138195475 (msh6)
DNA repair and recombination proteins [BR:
eja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
138195475 (msh6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
138195475
NCBI-ProteinID:
XP_069001038
LinkDB
All DBs
Position
Unknown
AA seq
1381 aa
AA seq
DB search
MAKQSSLFNFFTKSPPPVSKPKPTPSPTEADLPSSVEKCNSSPTEQAKQTPKQQQPTKAS
KVQQKKHSKAVNGGFKKLFGDKTPTTKESATRSYSAGALMWAKLEGHPWWPCMVVPQPVT
GQQMRGRGRDQRVHVHFFDEPPTRGWISSKYMREYQGSDSSDAKSGGVFFSGKPVIRRAM
ELADGVMFDSPEKRLKVPLCMDPSDEEEDDDEEMELDSSTLTDEEVSDVDEKKNKEQRPS
KVDRRSSRSSTEKGNEAKRRRIIVASDSDGSDEEFKPEHAASSSEEEEEEEAKVSSEEEE
EESQSEVDSPIKPVKRKRPTEKPADTKAKTPPARSAAPARAPAAVTANTKSRLSAFSAPD
NFESQTNGSGATGSATVWDHEKLEWLQEGRRKDRRRRRQTDDDYDPATLYVPEDFLNRTS
PGMRQWWLLKCQMFGTVIFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEIGFA
RFSDVLVQKGYKVARVEQTETPEMMETRCKTLAKPTKYDRVVRREVCRIITRGTQTYSVL
DGAPSESQSKFLLSVKEKAEEESSGRCRTYGVCFVDTSVGSFRVGQFPDDRHCSRLRTLI
AHFHPAEVLFEKGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDYFKET
AGEEQGTGSTFLPALLKSMTSESDSLRLTPQEGHELALSALGGCMFYLKKCLVDQELLSM
ANFEEYVPVDVELEKAAGPACFFAQTRQRMVLDGVTLANLEIFQNGSGGTEGTLLERLDT
CCTPFGKRLLKQWLCAPLCNATSIRDRLDAVEDLMGAQAQASEVSDLLKKLPDLERLLSK
IHSIGTPLKGQDHPDGRAVLYEEVTYSKRKIADFLSALEGFKTMQEIISLFASVFGEFRS
AFLRQVVSLNSEKNGLFPDLSAELLRWEKAFDHQKARTTGVITPKAGFDPEYDQALAGIK
NCERELQDYLGRQKKRLGCKNMAFWGTGRNRYQMEVPDSVSERNVPEEYQVKSTKKGWKR
YVTKESERLFSELQGFEEKRDAALKDCMRRLFYNFDMNYKDWKNGVECMAVLDVLLAMSR
YSQGGDGPMTRPQVVLPGDDGRVAPFVDLTGSRHPCVTKTFFGDDFIPNDIFIGCPGSSP
NGEEEGRASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFSPVDRVFTRLGA
SDRIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVKELAEKI
CCRTLFSTHYHSLVEDYSKNAAVRLGHMACMVENECEDPSQETITFLYKFITGACPKSYG
FNAARLASLPEEVIQSGHRKAREFEKSTASLRLFKKLCQFAEDATLDHAHFASLVQLLNT
P
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcagagctcgcttttcaattttttcaccaagtctccgccgccggtctccaag
ccgaagcccactccctcgccgaccgaagcggacctgccttcttcggtcgagaagtgcaac
tcctctccgacggagcaagccaagcagaccccgaagcagcagcagcccaccaaggccagc
aaagttcaacagaaaaagcactccaaggctgtgaatggggggttcaagaaattgtttggc
gacaagacaccaacaaccaaagagagcgccacacgctcatacagcgctggggccctgatg
tgggcgaaactggaaggacacccctggtggccatgcatggtagtaccccaacctgtgacc
ggacagcagatgaggggccgtggtcgggaccagcgcgtacatgttcatttctttgacgaa
cctccgaccagaggatggatcagctccaaatacatgagagagtaccaaggctctgacagc
agtgatgctaaaagtggaggcgtgttcttcagtggcaagcctgtgatccgtcgggcaatg
gagcttgctgatggagttatgttcgacagccctgaaaaaagattaaaggtgcctctctgc
atggatccatcagatgaggaagaggatgatgacgaagaaatggagctggacagctcaacg
ttgactgatgaagaggtcagtgatgtggatgaaaagaaaaataaggaacagaggccatcc
aaagtcgaccgacgttcatcccgttcttccacagaaaagggaaacgaagccaagcgccgt
cgcattattgtagcttcagacagtgacggatcagatgaggaattcaaaccagaacacgct
gcatccagcagtgaggaggaggaggaggaggaagcgaaggtgagcagtgaagaggaggaa
gaggagagccagtccgaagtggacagccccatcaaacctgtgaagcgcaaacgtcccacg
gaaaagcctgctgatacaaaagccaagacgcctcccgcccggtctgccgcacccgcacga
gctccggcagcagtcacagccaacacaaagtctcgcttgtcagccttctctgctcccgac
aacttcgagagccagacaaatgggtcgggggccactggaagtgcaacagtttgggatcac
gagaagctcgagtggttgcaggagggcaggaggaaagaccggcgaaggcggcgacagacg
gacgatgactacgaccccgccaccctgtacgtgccggaagacttcctgaacagaacctct
cccggtatgcgtcagtggtggctgctcaaatgtcagatgtttggtacagtgattttctac
aaggtggggaagttttatgaactctaccacatggatgcagtgatcggagtcaacgagctg
ggactaacattcatgaagggaacctgggctcactcgggctttccagagatcggcttcgca
cgtttctcagatgtactggtccagaaaggctacaaggtggctcgcgtggagcagacggag
accccggagatgatggagacgcgctgcaagaccctggcgaagcccacaaagtacgaccgc
gtcgtgagaagagaagtgtgccgaattatcacccgcggcacccaaacctacagcgtgttg
gacggcgctccctcggagagtcagagcaagttcctcctgagcgtgaaggagaaggctgaa
gaggaaagctccggtcgttgccgcacctacggcgtgtgctttgtggacacctctgtgggc
tccttccgtgtcggccagttcccggacgaccgtcactgctcacgcctgcgcaccctgata
gcacacttccaccccgcggaggtgctctttgaaaaggggaacccgtcggttgaaacgcgc
aaaatactcaaagcctctctgtcctctgctctgcaggaaggactgaatgcaggaacacag
ttctgggacgctcagaagactcttaaaaccctctcggaagaggattatttcaaagagacc
gctggcgaggagcaggggaccgggagcacctttctccccgctctcctgaaaagcatgacc
tccgagagcgattcactgcgccttactcctcaggagggtcacgagctggcgctgtcggcg
ttgggcggatgcatgttctacctcaagaaatgcctggtcgaccaagagttgctctccatg
gctaactttgaagaatatgttcccgttgatgttgagctggagaaggctgccggacccgcc
tgcttcttcgcccagactcgccagcgtatggtcctcgacggggtgactctggcaaacctg
gaaatctttcagaacgggtcaggagggaccgaagggaccctgctggagcgtttggacacc
tgttgtaccccgtttggcaagaggctgctgaagcagtggctctgtgctcctctgtgtaac
gccacatccatcagggacagactggatgcggtggaggacctgatgggtgcccaggctcag
gcctcggaggtctcggacctgctgaagaagctgccggatctggagcgtctcctgagtaaa
atccacagcattggcactcccctcaagggtcaggaccaccctgacggcagagcggtcctt
tacgaggaggtcacttacagcaagcgcaagatagcagacttcctctcggcgctggaaggt
ttcaaaactatgcaggagatcatttctctctttgcttcggttttcggagaatttcgctcc
gcgtttctccgtcaagtcgtcagcctgaacagtgaaaagaacggcctctttcccgacctc
tccgctgagctcctgcgctgggagaaggctttcgaccaccagaaagctcgcacgactggc
gtcatcaccccgaaagctggctttgacccggagtacgaccaggctctggctggaatcaag
aactgcgaacgagagctgcaggattacctgggcaggcagaagaagagactcggctgcaaa
aacatggccttctggggaaccgggcgaaaccgctaccagatggaggttcccgacagcgtt
tcggagaggaacgtccccgaggagtaccaggtgaagtcgacaaagaaaggctggaagcgg
tacgtgacgaaggagtccgagcggctgttctcggagctgcaaggctttgaggagaagaga
gatgctgcactgaaagactgcatgaggaggctcttctacaactttgacatgaactacaaa
gactggaagaacggtgtggagtgcatggcagtgctcgatgtgctgctggccatgtcacgc
tacagccagggcggagacgggccgatgacccggccacaggtggttctccctggggatgac
ggccgggtagcaccctttgttgacctcactggatcccgccacccctgtgtcaccaagacc
ttttttggcgacgacttcattcccaacgacatcttcattggatgccccggtagcagtcca
aatggtgaggaggaaggtcgagcctcttgtgtcctcgtcacggggccgaacatgggaggg
aagtccactctcatgagacagtgtggactcgtgatcatcctcgcccagctgggctgctat
gttccggccgagagcctccgcttctcaccggtcgacagggtcttcacccggctgggagcc
tcagatcgtatcatggctggagagagcaccttctttgtggagctgagcgagaccgccagc
atcctccaccacgccacaaaacactcactcgtgcttctggatgaattaggaagaggcaca
gccacgtacgacggcacggcgatcgccagtgccgtagtgaaggagctcgcagagaagatc
tgctgtcgcaccctcttctctacacattaccactccctggtggaggactactccaaaaac
gctgctgtgcgtttgggccacatggcatgcatggtggagaatgaatgtgaggatccgagt
caagagaccattacgttcctctacaagttcatcaccggcgcatgtccgaagagttacgga
ttcaacgccgctcgactcgccagcctgccggaggaggtcatccaatcgggacacaggaag
gccagagagtttgagaagagcaccgccagcctcaggctcttcaagaagctctgccagttt
gctgaagatgccacgctggaccacgcacactttgcttcgcttgtccaactgctaaacacc
ccgtag
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