Embiotoca jacksoni (black perch): 138196073
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Entry
138196073 CDS
T10523
Symbol
smg8
Name
(RefSeq) LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
eja Embiotoca jacksoni (black perch)
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eja03019
]
138196073 (smg8)
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
138196073 (smg8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
DUF2794
Motif
Other DBs
NCBI-GeneID:
138196073
NCBI-ProteinID:
XP_069001880
LinkDB
All DBs
Position
Unknown
AA seq
921 aa
AA seq
DB search
MKESNMSLPVSVGTLLRADLPEDAAHRDDGLCVVGIFGKSSAQPGPPKDALINILADKHI
FSVFGAPEDAAAPDSCIQALHHRENRVLYLLLSSVCDSRQLLRACEALSAGTAHSDAQDF
WKGLDRQHCLHLLYLFSVCHVLLLVHPNHTFDVTYDRLFRALDALRQKVLPLVRAAIKDC
PVSKEWKLNCRPCPPRLLFVFQMNGSLKVSGNGSESGGNPDKPKKHSPRRRLQHALEDQI
YRIFRKSRVLTNQSSNCLFTVPANQAFVYVIPGTDEDPVGSLLSQLRSNCSLCEQEPVPP
VTGPRRYQQTRRSTRQPGGGCESSGVSAGGQLVDCSLKEFLWQHVDLVLTKKGFDDSVGR
NPQPSHFELPTYGKWVQVASRLHQVVVGDTDEELAELAVKAQSQVKVLEGFLDADTKFSE
NRCQKALPLAHSAYQSNLPHNYTTTVHKNQLAQALRVYSQHARGVAFQRYALQLHEDCYK
FWSNGHQLCEERSLTDQHCVHKFHLLPQPGEKPDVDRNPPVLNHNSRGRSTSSCNCGRKQ
APREDPFDVQGANYDFYQMLEEKCCAKLERMDFPVFQPSTPDPAPASNRPPPAEASASGE
PERLKEPSAAQSHTPADASLSLALSLGQSSDSLGPYGDGDGPDNQVQQKRPSLIDRQPST
VEYLPGMMHSGCSKGLLPKFSSWSLVKLGPAKSYNCHTGLEQPGFLPGSSFLLPWDLVIR
SRSEEDAGLTDSLDGGASSWPAPNKNVVGKRGSTGGLGRSRRRDDMARVFVGFEYEDSRG
RRFISCGPDKVVKVLGPGGAKEPATRVLNTDMPLYIPSPSQGRGLKPHYAQLARLYVVVP
DTSLEVTLNPQVQPGPPPCPVFHPEQTDIVLQPDGLWVLRFPYSYATEHGTCYPPKENQP
LNNYKVQRGILKATTANPPPQ
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaagcaacatgtctctcccggtgagcgtggggactctgctgcgggcggacctc
ccggaggacgccgctcaccgggacgacggcctgtgcgtcgtcggtattttcggtaaaagc
agcgcgcagcccggaccgccgaaggacgcgctcatcaacatcctggcggacaaacacatc
ttctcggtgttcggcgcaccggaggacgccgccgcccccgacagctgcatccaggcgctc
caccaccgggagaaccgggtgctgtacctgctgctgtcctccgtgtgcgacagccggcag
ctgctgcgggcctgcgaggctctgagcgccggcaccgcccactcggacgcgcaggacttc
tggaagggtttggaccggcagcactgcctccacctgctctacctgttctccgtgtgccac
gtcctcctgctcgtgcaccccaaccacaccttcgacgtgacctacgaccggctcttccgg
gccctggacgccctgcggcagaaggtgctgcctctggtccgggcggccatcaaagactgt
ccggtgtccaaagagtggaagctgaactgccggccgtgtccgccgcgcctgctcttcgtg
ttccagatgaacggttccctgaaggtgtcgggaaacggctcggagtctggaggaaacccc
gacaaacccaaaaagcactcccccaggaggcggctgcagcacgccctggaggaccagatc
taccgcatcttccgtaagagccgcgtcctcaccaaccagagcagcaactgtttgttcacg
gtgccggccaaccaggcgttcgtgtacgtgatccccggcacggacgaggacccggtgggc
tccctgctcagccagctgcggtccaactgttcgctgtgcgagcaggagcccgtcccgccg
gtgaccgggccgaggcggtaccagcagacgcggcgttcgacccggcagcccggcggcggc
tgcgagtcgagcggcgtgtcggcgggcggtcagctggtggactgcagcctgaaggagttc
ctgtggcagcacgtggatctggttctgaccaagaaaggcttcgacgacagcgtcgggcgc
aacccgcagccgtcgcacttcgagctgccgacctacggcaagtgggtccaggtggcctcc
agactgcaccaggtcgtcgtcggcgacacggacgaggagctggccgagctggccgtcaag
gctcagagccaggtgaaggttctggagggcttcctggacgccgacaccaagttctccgag
aacaggtgccagaaggcgctgccgctggctcacagcgcgtaccagtccaacctgccgcac
aactacaccaccacggtccacaagaaccagctggcgcaggcgctgcgcgtctacagccag
cacgcccgcggcgtcgccttccagcgctacgccctgcagctccacgaggactgctacaag
ttctggagcaacggacaccagctgtgtgaggagcgcagcctcaccgaccaacactgtgtt
cacaagttccacctgctgcctcaaccaggagagaaacccgacgtggatcgtaaccctccc
gtcctgaaccacaacagcagggggcgctccaccagctcctgcaactgcggcaggaaacag
gctcctcgagaggatccgttcgacgtccagggcgccaactacgacttctaccagatgttg
gaggagaaatgctgcgcgaagctggagaggatggacttcccggtgttccagcccagcacc
cccgacccggctccggcctccaaccggccgccccccgccgaggcctcggcctccggggag
ccggagaggctgaaggagccgagcgccgcccagagccacaccccggccgacgccagcctc
agcctggctctgagtctgggccagtcctccgacagcctggggccctacggggacggggac
ggacccgacaaccaggtccagcagaagaggccgagcctcatcgaccgccagccgtccacg
gtggagtacctgccgggcatgatgcactcgggctgctccaaaggtctcctccccaagttc
tccagctggtctctggtcaaactgggaccggcaaagtcctacaactgccacacgggcctg
gagcagccgggcttcctccccggctcctccttcctcctaccgtgggacctggtgatccgg
tctcggtcggaggaggacgccggactcaccgactctctggacgggggcgcctcctcgtgg
ccggcccccaacaagaacgtggtggggaagcggggcagcaccggagggctgggccggagc
cggcggagggacgacatggcccgggtcttcgtggggttcgagtacgaggacagcaggggg
cgccgcttcatcagctgcgggccggataaagtagtgaaggttctgggaccgggcggcgcc
aaagaacccgccaccagggttctgaacaccgacatgccgctctacatcccgtctccgtca
cagggccgcggcctgaagcctcactacgctcagctggctcgcctttatgtcgtagtgccc
gacacgtcgctggaggtcaccctcaacccccaggtgcagcccggtccgcctccctgcccc
gtcttccacccggagcagacggacatcgtgctgcagcccgacggcctctgggtgctgcgc
ttcccttattcctacgccacggagcacggcacctgctacccgcccaaagagaaccagccg
ctgaacaactacaaggtgcagcgaggcatcctgaaggccaccaccgccaaccctccaccg
cagtga
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