Embiotoca jacksoni (black perch): 138196144
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Entry
138196144 CDS
T10523
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03410
Base excision repair
Brite
Enzymes [BR:
eja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138196144 (lig3)
DNA repair and recombination proteins [BR:
eja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
138196144 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
138196144
NCBI-ProteinID:
XP_069002021
LinkDB
All DBs
Position
Unknown
AA seq
1017 aa
AA seq
DB search
MQRPLSLLLHKTVCVGLQPLGLFVRCRLLKARRAFSVSSRSERSAPPHAFNFSGKIRQLS
SAPRELQHLHPPRLSPRRRFSDRADMSEQRFIVEYAKRGTAGCKKCKDKIPKGVVRIGKI
VPNPFSESAGEMKEWHHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKEIINKHVS
DLMAKVNATPKKKVQAKMNTGGQLMAPPADPSVNAPRKFSGFTAAKAGGSGSPGPSSSSS
SSSSPAKASQGSALSTQLCDLQHKDCLFREFRKLCAMVAEINSYNSKTQIIEKFLRKGSG
GDKFHGDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRCNQDDMVRDLEQGDVSETVR
MFFDESKAFPPSAKSLLTIQEVDASLTRLAQLTKEDEQQTELEDVAKKCTSNDLKCIIRL
IKHDLKMNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQEASNGSGPRKLLTVEA
SLMTPVQPMLAEACKSVEYAMKKCPNGMYSEIKYDGERVQVHKSGDTFSYFSRSLKPVLP
HKVVHFKDYIPQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDANVGLFVF
DCIYFNGVSLMERPLSERRKFLHDNMVEVPNRILFSEMKHVTRAGDLAEMITRVIREGLE
GLVLKDIKGSYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGC
YDPASKKWCTVTKCSGGYDDAMLARLQKELDMIKISKDPSKIPGWLKIIKNYYPDFIIRD
PERAPVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKSATNLQQLKELFRISKEN
CDFKVTAGPSASNDDRGSSGGDSGGNSPPPPASHRGAPPKKTVGGRSAAPPKPKVVKSQP
RPPGSDGPGAKKVKKTESLHSNGQTRTQSTSQPPEMRNDKTLLDIFSGVKLFLPVSVQDF
DKLRRYFVAYDGDLVSEYDAASATHTLAEPEEDGRAQKVSSRWIWECIRKRRVVAPC
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgcagagacctcttagtttattacttcataagaccgtgtgtgtcggacttcaacctctc
ggactatttgtcaggtgccggctcttaaaggcgcgtcgagccttttccgtctcttcacgc
tccgaacgttctgcacctcctcacgctttcaatttctccgggaaaatccgtcagttgtcc
tcggcaccccgtgaactccaacaccttcatcctccccggctttccccgcgccggcgtttc
tccgaccgggccgacatgtcggagcagaggttcatcgtggagtacgccaagcgcggcacc
gcggggtgcaagaagtgcaaagacaaaatcccgaagggcgtcgtgcgcatcggcaagatc
gtgccgaaccctttcagcgagtccgccggcgagatgaaggagtggcaccacgtgaagtgc
atcttcgagaagctggagagggcgagagccaccacgaagaagatcgaggacatcacggat
ctggagggctgggaggagctgcaggacgaggacaaggagatcattaataaacacgtctcg
gacctgatggccaaagttaatgcgactcccaagaagaaggtgcaggccaagatgaacacc
ggcgggcagctcatggctcctccggccgatccgtccgtcaacgcgccgcgcaagttctca
ggcttcaccgctgcgaaggctggcggctccggcagccctggaccctcctcttcctcctcc
tcctcttcctccccggccaaagccagccaaggcagcgccctgtccacccagctgtgtgac
cttcagcacaaggactgcctcttcagagagtttcgcaagctgtgtgcgatggtggcggag
atcaacagctacaactccaagacgcagatcatcgagaagttcctgaggaagggctccggc
ggagataagttccacggagatctttacctgacggtgaagctgctgctgccgggcgtcgtg
aaaagcgtctacaacctcaacgacaagcagattgtaaaactcttcagccgcatattcaga
tgcaaccaggacgacatggtgcgcgacctggagcagggcgacgtgtctgagacggtgagg
atgttcttcgacgagagcaaagcgttccctccgtccgccaagagcctcctgaccatccag
gaagtggacgcgtcgctgacccgcctcgcccagctgaccaaggaggacgagcagcagacg
gagctggaggacgtcgccaaaaaatgcaccagtaacgacctgaagtgcatcattcggctg
atcaaacacgacctgaagatgaactccggcgccaaacacgtattggacgccgtggatccc
aacgcgtacgacgccttcaaggcctcgcgtaacctcggcgacgtgatcgagcgggtgctg
aggaatcagcaggaggcgtccaacgggtcgggacccaggaagctgctcaccgtggaggcc
tcgctcatgacccccgtccagcccatgctggcggaggcttgtaaatccgtcgagtacgcc
atgaagaagtgccccaacgggatgtactcggagatcaagtacgacggggagcgcgtgcag
gtccacaagagcggcgacaccttcagctacttcagccgcagcctgaagcccgtgctgcct
cacaaagtggtccatttcaaagactacatccctcaggcgtttcctgggggccacagtatg
atcctggacgctgaagtcctcctaattgacacaaagaccagtaaaccgctgcccttcggg
acgctcggcgtacataagaaagccgccttccaagatgccaacgtgggcctttttgttttc
gactgcatctacttcaacggcgtgagtctcatggagaggccgctgtctgaacgcaggaag
ttcctccacgacaacatggtggaagtccccaacaggatcctgttctctgagatgaagcac
gtcactagagccggggatctggctgaaatgataactcgtgtcatcagagagggactcgaa
ggcctcgtgctcaaagacataaagggctcctacgagccagggaagcgccactggctgaaa
gtgaagaaggactacttgaacgaaggagcgatggccgacacggccgacctggtggtgctg
ggagcgttctacgggaaaggatcgaacgggggcatcatgtccagcttcctgatgggctgc
tacgacccggcctccaagaagtggtgcaccgtcaccaagtgctccggcggctacgatgac
gccatgctggcgcgcctccagaaggagctggacatgatcaaaatcagcaaggacccgagc
aaaatccccggctggctgaaaatcatcaagaactattatccagatttcattatccgcgat
cccgagcgagcgcccgtctgggagatcacaggcgccgagttctccaaatcagagatgcac
accgccgacggcatctccatccgcttcccccgcatgacgcgcatccgcgacgacaaggac
tggaagagcgccaccaacctgcagcagctcaaagagctgttccgcatctcgaaggagaac
tgcgacttcaaagtgacggccggtccgtcggcgtccaacgacgaccgcgggtcgtcgggg
ggcgacagcggagggaactcgccgccgccgccggcgtcccacagaggcgctccgcccaag
aagaccgtcggcggcagaagcgccgctccgcccaaacccaaggtggtgaagtcgcagcca
cgcccgcccggctcagacggccccggcgccaagaaggtgaagaagacggagagtctccat
agcaacggacagaccagaacccaaagcacgtctcagccgccggagatgcggaacgacaag
acgctgctggacatcttcagcggcgtgaagctcttcctgcccgtctcggtgcaggacttc
gacaaactgaggcgctacttcgtggcgtacgacggcgacctggtgtcggagtacgacgcc
gcctcggccacgcacacgctggccgagcccgaagaggacggccgggcccagaaggtgtcg
tcccgctggatctgggaatgtatccgcaagaggcgcgtcgtagcgccctgctag
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