Embiotoca jacksoni (black perch): 138196526
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Entry
138196526 CDS
T10523
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b
KO
K19719
collagen type II alpha
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja04510
Focal adhesion
eja04512
ECM-receptor interaction
eja04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138196526 (col2a1b)
04518 Integrin signaling
138196526 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138196526 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
eja00536
]
138196526 (col2a1b)
Glycosaminoglycan binding proteins [BR:
eja00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138196526 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
138196526
NCBI-ProteinID:
XP_069002736
LinkDB
All DBs
Position
Unknown
AA seq
1491 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLAVVRCQEADDQEDAFSCIQDGQRYSDKDVWKPEPCRICV
CDTGTILCDEIVCEELKDCPKPEIPFGECCPICAADQSTSIGAPGAKGQKGEPGDITDVV
GPRGPAGPMGPSGEQGHRGARGDKGEKGGAGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQS
GPMGPRGPSGSPGKPGDDGEAGKPGKSGERGPTGPQGARGFPGTPGLPGIKGHRGYSGLD
GAKGETGAVGSKGEAGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGELGPG
GLQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPS
GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGGAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLSGAPGLRGLPGKDGETGAGGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGTAGGQGPPGLQGMPGERGGAGIPGPKGDRGDLGEKGPE
GASGKDGGRGLTGPIGPPGPGGPNGEKGESGPSGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGSDGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVYGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGAAGPAGSPGKDGPKGVRGDGGPPGRQGDAGLRGPAGTPGEK
GDAGDDGPSGPLGPSGPQGLTGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGGAGDR
GPPGPVGPPGLTGPSGEPGREGNSGSDGPPGRDGSAGIKGDRGNTGPVGAPGAPGAPGAS
GPVGPTGKQGDRGESGAQGPAGPSGPAGARGMPGPQGPRGDKGEAGEGGERGQKGHRGFT
GLQGLPGPPGQSGDQGATGPAGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRSGET
GPAGPPGNSGPPGPPGPPGPGIDMSAFAGLGQIEKSPDPLRYMRADQASGNLRQHDVEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCN
METGESCVYPKPSSIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDNLAPNTAAIQMT
FLRLLSTESSQNLTYHCKNSMAYMDASTGNLKKAVLLRGSNDVEIKAEGNSRFTYSVMED
GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGSVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcaacccaagtttgtcta
ttagccgttgtaagatgtcaggaggcagacgaccaggaggatgcttttagctgtatacaa
gatggacagcgttatagcgacaaggacgtatggaaaccagagccttgtcgcatctgtgtg
tgcgacactggaaccatcctgtgtgatgaaattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgcgctgctgaccagtctacgtcc
attggagcacctggagctaagggtcagaagggcgaacccggagacattacagatgttgtt
ggaccaagaggaccagctggcccaatgggcccatctggagagcaaggacaccgcggagcg
agaggagacaagggagaaaagggaggtgctggtccccgcggcagagatggtgagcctggc
acccccggaaaccctggtccccctggacctccaggacctaatggaccccctggccttggt
ggaaactttgctgctcagatggctggtggtttcgacgagaagtctggcggtgcacagatg
ggtgtgatgcaaggaccaatgggccctatgggacccagaggaccacctggccccactgga
tcacctggtccacaaggtttccaaggcaacccaggagaggctggagagcccggacaatct
ggccccatgggtccccgtggcccctctggatctcctggaaaacctggagatgatggtgag
gctggcaaacctggaaaatcaggcgagcgtggacctactggacctcagggagctcgtgga
ttccccggaacgcctggtctgcctggcatcaagggacacagaggttattcaggacttgat
ggtgcaaagggagagactggagctgttggttctaagggtgaggctggtgctcctggagag
aatggcgctcctggacctatgggaccacgtggtttgcctggtgagagaggacgtcctgga
cccagtggagctgctggagcacgtggaaatgatggcttgcctggccctgctggtcctcca
ggccctgttggtccttctggagctccgggctttcccggctctcctggttcaaagggagag
gctgggcccacaggtgctcgtggacccgagggtgctcagggacctcgtggagagtctggc
actcctggatcatccggaccttctggtgcttctggcaaccctggtaccgatggtatccct
ggagctaaaggatcagctggtgctcctggtatcgctggtgctcctggtttccctggacca
cgtgggcctcccgggcctcagggagcaactggacctctcgggcccaaaggaacatctgga
gacccgggtatcccagggttcaagggagaggctggccccaaaggagaacttggaccaggt
ggtcttcaaggagctcctggcccacaaggagaagaaggcaagaggggacccaggggtgag
cctggtgctgctggaccacttggacctcctggagagagaggatcccctggtaaccgtggt
ttccctggtcaagacggtctggctggtcccaagggcgcccccggtgagcgtggaccctct
ggagctagtggtcccaagggtgctaatggtgaccctggccgtcctggagagtctggtctg
cctggtgccaggggtctgactggacgcccgggtgatgccggtcctcaaggcaaagttgga
ccttctggaggtgctggtgaggatggtcgtccaggaccccctgggccacagggagcccgc
ggacagcctggcgtcatgggattccccggccccaagggagcaactggtgaacctggcaag
tctggtgagaaaggactgtctggagctcctggtctgagaggtctacctggcaaagatgga
gaaaccggcgctggtggacccccaggccctgctggccctgctggagagagaggagagcaa
ggacagcctggtccctcaggcttccagggtcttcctggacctcctggcccccctggtgag
ggaggcaagccaggagaccagggtgttcctggagagggtggagctgctggtgccactgga
cccagaggagagcgtggtttccccggagagagaggagccgctggccctcagggtctgcag
ggacccagaggtctgcctggaactcctggaactgacggacccaagggcgctattggacct
gccggtactgccgggggtcagggaccccccggtctacagggtatgcccggagagagagga
ggtgcaggcattcctggacccaaaggagacagaggtgaccttggagagaaaggacccgaa
ggtgcttctggcaaagatggtggcagaggtctcactggtcccattggtcctcctggtcct
ggtggtcccaatggtgagaagggtgaatctggtccctctggtccctctggtgctcctggt
acccgtggtgctcctggtgacaggggagagactggacctcctggacctgctggttttgct
ggaccccctggttcagatggtcagcctggaatcaagggagagcagggagaaagtggacag
aagggtgacgctggtgcccctggaccccaaggaccatccggtgccccaggacctgcaggt
cctacaggtgtttatggacctaaaggtgcccgtggtgctcagggacctcctggtgccact
ggtttccctggagctgctggccgagtcggaccccccggccccaatggtaaccccggagct
gctggtcctgcaggctctcctggtaaagatggacccaagggtgtgaggggagatggtgga
cccccaggcagacagggtgacgctggactccgtggtcctgctggaactcctggtgagaag
ggagatgctggagatgatggtccttctggacccctaggtccttcaggtcctcaaggattg
actggtcagcgcggtattgttggtctacctggacagcgtggtgaaagaggtttccctggt
ctgcctggaccctctggtgagcccggaaagcagggaggacctggtggtgctggagaccgt
ggaccccctggacctgttggaccacctggactcactggaccttctggagagcctggcaga
gagggcaactccggatctgatggacctcctggtagagatggttctgctggaataaagggt
gatcgtggtaacactggtcctgttggtgctcctggcgctccaggtgctcctggtgcttct
ggccccgtgggtcccaccggcaaacagggagacagaggagagtctggtgcacaaggacct
gctggaccttcaggacctgctggagccagaggaatgcctggaccccaaggacctcgtggt
gacaagggtgaggctggagagggaggtgagaggggacagaagggacacagaggcttcact
ggtctgcagggtctccccggacctccgggtcaatctggagaccagggtgctactggacct
gctggaccttctggacaacgaggaccccctggacctgttggccctgctggaaaggacggt
tcaaatggtctgccaggacccattggaccccctggacctcgaggtcgcagtggagagacc
ggtccagctggtcctcctggaaactctggacccccaggtcctcccggccctcccggccct
ggcattgatatgtctgccttcgctggtctgggtcagattgagaagtcccctgatcctctc
aggtacatgagggccgaccaggcttccggaaacctccgtcagcatgacgttgaggtcgac
gccacactcaagtctctcaacaaccagattgagaacatccgcagcccggagggatccaag
aagaaccctgctcgcacctgcagagacctgaagctctgccatcccgactggaagagcgga
gagtactggattgatcccaatcagggctgcaccatcgatgcaatcaaggtcttctgcaac
atggagacaggggagtcctgcgtgtaccccaagccttccagcatccctcgcaagaactgg
tggtccagcaagagcaaggaccgcaaacatgtctggttcggagagacaatgaatggagga
ttccacttcagctatggtgacgacaacctggcgcccaacaccgccgccattcagatgact
ttcttgagactgctgtccaccgagtcttctcagaacctcacctaccactgcaagaacagc
atggcctacatggacgcctcaacaggcaacctgaagaaggccgtgctgctgcggggctcc
aacgacgtggagatcaaagccgagggcaacagccgctttacctacagcgtgatggaagac
ggctgcacgaaacacacgggacagtggggcaagacagtgatcgaatacagatcgcagaag
acctctcgtctgcccattgtggacattgcccccatggatattggtggagcagaccaggag
ttcggagttgacatcgggtcggtctgcttcttgtaa
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integrated database retrieval system
