Embiotoca jacksoni (black perch): 138196825
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Entry
138196825 CDS
T10523
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138196825 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eja03041
]
138196825 (prpf40a)
Spliceosome [BR:
eja03041
]
Complex A
U1 snRNP components
U1 related factors
138196825 (prpf40a)
Complex B
138196825 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
138196825
NCBI-ProteinID:
XP_069003291
LinkDB
All DBs
Position
Unknown
AA seq
876 aa
AA seq
DB search
MSSSEANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHFPPIGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRMPAAAVQPTGPPGVDSTAAAPGTSSTT
NGSPQEEQPKKKSLWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEAAAPGTAAAPTVQADNMATM
ATIMEVETATAVSEEHLSQAAVHQTAEVKTADAPVASSETTEGTASIEVTKEDRPELQKK
TYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNAYKV
QTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFNELEVWSCVPERDRLE
IYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAED
EELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHDHGQ
LHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDK
GFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRK
EAAFKNMLKQATPPLEPESTWEAVRDRFLKESAFEDVTLESERKRIFKDFMHVLEHECQH
HHSKTKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSQSKSPSERSSSGESERSYKK
SKKHKKKGKKRRHKSASPESENEKKGRERDGKREKDMEKDKENDKSRGKSRSDSKQKSPK
RKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggaggctaataatggcccgagccaagcgccaccttatccaggtgtaccg
ccctcagggatacctcccccatttatgggaccaccaggaataccccctcacttccctccc
attggaatgccccctatgggacagcgtcctcccagcatgacacctatgccacctggtata
attccccctggcataatgccaccaatgggggcaccaccgatggggcagatgccaggcatg
atgccacctatgatgccagggatgatgatgccccctcgcatgccagctgcggctgtacaa
ccaacggggccgcctggtgttgactccacagctgctgcacctggaacatctagtaccaca
aatggatcgccacaggaggagcagccgaaaaagaagtccctgtggacagaacacaaatca
ctggatgggaagacctattattacaatacagagacgaagcaatccacgtgggagaaaccg
gatgagctcaaatctcctgcagagcaaatgctgtctaaatgcccttggaaggagtacaag
tcagatacggggaagccttattattacaactcgcagacgaaggagtccagatggaccaaa
cccaaagagctggaggatctggaagctatgatcaaagcagaggagaatggaacggcagag
gcagcagcccctggaaccgctgcagctcctacagtgcaagcagataacatggccactatg
gcaaccataatggaggtggaaactgcaacagccgtctcagaggaacacctgtcccaggcg
gctgtgcatcagacagctgaggtcaagacagcagatgcgcctgtggcttcctccgagacc
acagagggcacagccagtatcgaagtcacgaaggaagaccgtccagaacttcaaaagaag
acgtacaaatggaacacaaaagaggaggccaagcaggccttcaaagagctgctgaaagag
aagggtgtttcctcaaactcctcgtgggaacaggccatgaaaatgattatcaatgatcct
cgctacagtgcccttcccaaactgagtgaaaagaagcaggcgttcaatgcctacaaagtc
caaacagagaaggaagaaaaggaggaggccagaattaaatacaaggagtccaaagagacc
tttcagagattcttggagaaccacgacaagatgacatctaccaccagatacaagaaagcg
gagcagatgtttaatgagcttgaagtgtggagttgtgttcctgagagagacaggctggag
atctatgaagatgtgctgttctatcttgctaaaaaggagaaggaacaagccaagcagctg
agaaagaggaactgggaagctctgaagaacatcctggacaacatggccaacgtcacatac
cgcaccacctggtctgaggcccagcagtacctgcttgacaaccccacctttgcagaagat
gaggagctgcagaatatggataaagaagatgcccttatttgttttgaggagcacattcgg
gcactagagaaggaggaggaggaagagaaacaaaagactctcctcagggaaagaagacga
caacgcaagaacagagaggccttccagaaatttctggacgagcttcacgaccacggccag
cttcactccatgtctgcctggatggagatgtacccgacgctcagctccgacatccgcttt
gccaacatgctgggccagccgggttccactcctttggacctgttcaaattctatgtggaa
gacctaaaagcccgctaccacgatgaaaaaaggataatcaaagatattcttaaggacaaa
ggattcctagttgaagtcaacactagctttgatgactttggatcagtcatcagctcagac
aagagggccaccacactggatgcaggaaatataaagctggccttcaacagtttactggag
aaggctgaagcccgagagagggagcgtgagaaagaggaggccaggaagatgaaaagaaaa
gaagcagccttcaagaacatgctaaagcaggccacaccgccactggagccggagtctaca
tgggaggctgtcagagacagattcttaaaagaatctgccttcgaagacgtgactctggag
tcagagaggaagagaatattcaaagatttcatgcatgtcttggagcatgaatgccaacac
caccactccaagactaagaagcactccaagaagtccaagaagcaccacaggaaacgatcc
cgctcccgatcaggctcagagtctgaggacgaggaataccacaagaagaaaaagaggtca
cagtccaaatctccatcagaacgctcatccagcggagaatctgagagaagctataaaaaa
tccaagaagcacaagaagaagggcaagaagagacgccataagtctgcctcgccggagtct
gaaaatgagaagaaaggaagagagcgcgatggaaagcgtgaaaaggacatggagaaggat
aaagagaacgacaagtctcgggggaaatctcgctctgactctaaacagaaatctccgaaa
aggaaagcggccaaagaggagggtggctgggacacgtcaggcagtgagctgagtgaagga
gagctggagaaaaggagaagaactttactggaacagctggatgcaccatga
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