Embiotoca jacksoni (black perch): 138199354
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Entry
138199354 CDS
T10523
Symbol
col11a1a
Name
(RefSeq) collagen, type XI, alpha 1a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
138199354 (col11a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
eja00536
]
138199354 (col11a1a)
Glycosaminoglycan binding proteins [BR:
eja00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138199354 (col11a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
138199354
NCBI-ProteinID:
XP_069007491
LinkDB
All DBs
Position
Unknown
AA seq
1805 aa
AA seq
DB search
MEMQRWSTRWKTKRWLMDSTVTAIITLTLVLQAANVRAAEPVDVLKVLAFQNYPEGVTKT
SGFCANRRASKPDSAYRVAEQIQISAPTTQLFPGGVFPEDFSILATVRPKSGLQSFLLSV
YNEQGVQQLGVEVGRSPVFLYEDQTGKPAPEDYPLFRTLNLADGKWHRVAISVEKKTVTI
IVDCKKKITKPLLRSDHASINTNGITVFGTRILDEEVFQGDIQQLLIVADSKAAYDYCEH
YSPDCDTPHSDSLQAQEPEEEYTTDDLDYSQFYDYSEGATDIIPTDEYSEPQLNNVEGDY
NTDIDYGTVDGSQTQSPFATSGPNEAVEEDAFGAYFTEAAPVAVQPTVVPETVDGLDTGA
EAYDLEYDLGAVDKRLYDYGAYDEYGTAPPKPRTSYDDEVGPGVAAETDVSESTVAGAEG
ALGQKGEKGEPAVIEPGMLIEGPPGPHGPAGLPGPSGLQGPPGPSGDSGDRGPPGRAGLP
GADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPMGLTGRS
GPVGPPGTGGLKGESGDPGPQGPRGVQGPSGQTGKAGKRGRAGADGARGMPGEPGSKGDR
GFDGLPGLPGEKGHRGELGPMGPPGTSGEDGQRGEDGEIGPRGLAGESGPRGLLGPRGSP
GPPGSPGVAGVDGPPGSKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEKGPQGRS
GLSGLPGADGPPGHPGKEGPAGEKGAQGPSGPQGPIGYPGPRGVKGADGVRGLKGSKGEK
GEDGFPGFKGDMGIKGDRGELGMLGSRGEDGPEGPKGRAGPNGESGPLGPAGEKGKLGVP
GLPGYPGRQGPKGSSGFPGFAGANGEKGARGIAGKPGPRGQRGPTGPRGARGARGPTGKP
GPKGTAGNDGPAGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKT
GPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGSSGKD
GPPGLRGFPGERGLPGATGPAGLKGGEGPQGPPGPVGSPGERGPAGSAGPIGLSGRPGPQ
GPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEPGQKGSK
ADKGEQGPPGPAGLQGPIGAPGPAGADGEPGPRGQQGMFGQKGDEGSRGFPGPPGPIGLQ
GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPMGSVGEKGEQGEA
GNPGPSGEPGTGGPKGERGEKGEAGPPGSAGPAGAKGPPGDDGPKGNPGPVGFPGDPGPP
GEPGVAGTDGESGEKGEDGESGQPGPPGPSGEAGPPGPPGKRGPPGTAGAEGRQGEKGAK
GEAGSEGPAGKTGPVGPQGPPGKPGPEGLRGIPGPVGEQGLPGSPGQDGPPGPMGPPGLP
GLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGGKGDGGIGGASGPLGPP
GPPGLPGPQGPKGSKGSSGTAGPKGDTGSIGPPGPPGPPGEVIQPLPIQSPKKTKRSSGM
QSDTAGTIMDYGDGMADIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPEFPDGE
YWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNGVRISSWPKEAKGSWFSEFKRGKMF
SYADVDGNSINMVQMTFLRLLTASARQNFTYTCHQSVAWHDASSDSYDKALHFLGANDEK
MSYDNNPYIKTLSDGCATRKGYGKTVLEIDTPKIDQVPIIDVMLTDFGDPNQKFGFEVGP
VCFLG
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaaaggtggctaatggattccact
gtaaccgcaatcatcactttaaccctggttctacaggctgctaatgtcagagcagcagaa
ccagtggatgtcctaaaagtattagcatttcaaaattaccccgaaggagtgacaaaaaca
tcaggattttgcgcaaaccgaagagcctcgaagcctgactcggcgtacagagttgccgag
cagatccagatcagcgcccccaccacgcagctattccctggtggtgttttccctgaggac
ttctccatcctggccacagtgcgccccaaatctggcctccagtccttcttgctgtccgtc
tacaacgagcagggagtccagcagctgggcgtggaggtgggacgctcgcccgtcttcctg
tacgaggaccagaccggcaagcccgcccccgaggactacccgctgtttcggactctcaac
ctcgctgatggaaagtggcaccgcgtggccatcagcgtggagaagaagacggtcaccatc
atcgtcgactgtaagaagaagatcaccaagcctctgctcaggagcgaccacgcctccatc
aacaccaacggcatcaccgtgttcggcaccaggattctggacgaggaagttttccagggt
gacatccagcagcttctgattgtggctgattccaaagcagcatatgactactgtgaacac
tacagccccgactgtgacactccccacagcgactccctgcaggcccaggagccagaggaa
gagtacactactgatgatttagattactctcagttctatgattactctgagggagccaca
gacatcattcccaccgatgagtattctgagccgcagctaaacaatgtagaaggagattac
aatacagacattgactacggaactgtagatggttctcagactcagtcaccttttgccaca
agtggacccaatgaggctgtggaggaggacgccttcggtgcatatttcaccgaggccgct
cccgtcgccgtgcagcccaccgttgtcccagaaacggtggacggcttggacactggcgct
gaggcgtatgacttggaatatgacctgggcgcggttgacaaaaggttgtatgattatggg
gcgtatgatgagtatggcacggccccgcccaaacccaggacgagctacgatgatgaggtg
gggcccggggtcgctgctgagaccgacgtttctgagagtaccgttgctggtgctgaagga
gccctcggccagaagggagagaagggcgagccggctgtgattgaacctggcatgctgatt
gaaggaccaccaggaccccacggcccagctggtcttccaggaccctcaggcctacaagga
cccccaggcccctctggagattctggtgacaggggtcctcctggtcgggctggtctgcct
ggtgctgatggtttaccaggaccccctggtaccatgctgatgctgccattccgtttcggt
ggtgacggtgagaagggtcctgtggtgtcggcccaggaagcccaagcgcaggccatcctt
tcccaggccagactggcgatgaggggacccccggggccaatgggtctgacaggaagatcg
gggccagtgggtcctcccggtactggtggattgaagggtgaaagtggagaccctggtccg
cagggtccccgaggtgtccaagggccttctggacaaactggcaaagctggcaagagggga
cgcgccggagccgacggtgctcgtgggatgcctggagagccgggctccaagggggaccga
ggcttcgatggacttcccgggctgcctggtgaaaagggacaccggggcgagctagggcca
atgggacccccaggtacttctggagaggatggacagagaggcgaggatggagagatcggg
ccgagaggattagctggcgagagtggtcctcgaggtttgctgggacctcgtggttctccg
ggaccccctggatcgcctggtgtcgccggtgttgacggacctccaggttccaaaggaaac
atgggaccacaaggagagccgggcccaccgggtcagcaggggatccccgggactcagggt
cttcctggtcctcaaggccccattggaccacctggagaaaaaggacctcagggcaggtcg
gggctgtctggattacccggagctgacgggcctcctggtcatcctggaaaggagggtcca
gctggagagaaaggagctcagggtccatcaggtccacagggtcctattggttatcctggc
cctcgtggtgtcaagggtgcagatggtgtccgtggccttaagggatcaaagggagagaag
ggcgaggatggtttcccaggttttaagggggacatgggaatcaaaggagaccggggtgag
ctcggcatgctcgggtctcgaggagaggacggtcccgagggtcctaaaggaagagctggc
cccaacggagaatcaggtcctcttggtcccgctggagaaaagggtaaactgggtgtcccc
ggattgccaggttatccaggaagacaaggacctaagggctcgagcggcttccccggcttc
gctggagccaacggtgagaaaggagccaggggcatcgctggtaaacctggtccaagagga
caaagaggtccaacgggtcctcgtggggctcgaggcgccagaggtccaacaggaaaacct
ggtcccaagggcacagcaggcaatgacggtcctgcaggcccgcctggtgagagaggacct
caaggaccacagggaccagtaggcttccccgggccaaagggaccccctggaccacctgga
aaggacgggctgcccggacaccccggccagcgtggagagacgggtttccaaggaaaaact
ggtccaccaggcccgggaggtgttgttgggccccagggacccactggagagactggaccc
gttggtgagagaggccaccccggacctccaggcccacccggagagcagggtcttccaggt
gctgctggcaaagaaggagctaagggagatcctggacctcagggatcctctggtaaagac
ggtccccccggccttcgcggcttccccggagagcgaggcctacctggtgccacgggccct
gcaggtctgaagggaggagagggaccccaaggtccacctggtcctgttggttctcctggt
gagagaggtcctgctggttctgctggtccaatcggcctgtccggtagacccggccctcag
ggtcccccgggtcctgctggagagaaaggagcccctggtgagaaagggcctcaaggtcca
gctggtcgtgacggtgtccagggtcctgtcggtctacccgggcctgccggaccccagggc
ccacccggtgaggacggtgacaagggagaggtcggagagcccggtcagaaaggaagcaaa
gctgacaagggagagcagggtcctcctggcccagctggtctccaaggtcccattggtgcc
ccaggtcctgctggagctgatggagagcctggtcccagaggtcagcagggtatgtttgga
cagaagggagatgaaggctccagaggtttcccgggaccccctggacctatcggcctgcag
gggcttcctggacctccaggtgaaaagggggagaacggtgatgtcggaccgatgggccct
cctggtccccctggtcctagaggtcctcagggtccaagtggagctgatggtccacaaggt
cctccaggtggtgtgggcccgatgggatccgtgggcgagaagggtgagcaaggggaggcc
ggaaacccaggaccatctggagagcccgggactgggggacctaaaggtgagagaggagag
aaaggagaagctgggccccctggatcagctggacccgctggtgccaagggaccccctgga
gatgacggtccaaagggcaaccctggtcctgttggattccctggagacccaggcccacct
ggagagccaggtgttgctggcactgatggagaatcaggagaaaagggagaagatggtgaa
tccggtcaaccgggacctccaggtccatcaggggaagcgggcccacctggaccacctggc
aagaggggacctccgggcactgcgggtgcagagggcaggcaaggagagaagggcgctaag
ggtgaggcaggttctgagggtccagcaggtaaaacaggaccagtcggcccccagggacct
ccaggaaagcccggtccagagggtctgcgtggaatccctggccctgtcggtgaacaagga
ctgcctggctcccccggacaagatggtccaccaggtccaatgggtcctcccggtcttcct
ggtctcaaaggtgaccctgggtctaaaggtgaaaagggtcacccaggtttgattggtctg
atcggcccccccggtgagcaaggagagaaaggagaccgaggtttgccggggccccagggt
tctcctggtggcaagggcgatggtggtattggtggagcttctggtcctctcggtcccccg
ggtccacctggtctacctggtcctcaaggtcccaagggatccaagggttcatctggtact
gctggtcccaaaggagacactggttcaattggtcctcctggtcctcctggcccaccaggt
gaggtcatccaacctctgcccatccaatcccccaagaagaccaagcgctccagtggcatg
cagtcagacacagccggcaccatcatggactacggcgacggcatggcggacatcttcggc
tcgctcaacaacctcaagcaggacatcgaacgcatgaaatacccgatgggcacacagaac
aacccggccaggacgtgcaaagatctccagctctgccacccagagttccctgatggcgag
tactggatcgatccaaaccaaggctgctctggggattccttcaaagtctactgtaacttc
acagctggaggcgaaacctgcatctatccagataagaagtccaacggagtcagaatatct
tcatggccgaaagaagccaaaggttcatggttcagtgaattcaagcgtggtaaaatgttt
tcctatgccgacgttgatggaaactcaataaacatggtacaaatgaccttcctcagacta
ctgacagcctcagccaggcaaaacttcacctacacctgccaccagtctgtggcgtggcac
gacgcctctagcgacagctacgacaaggcgctgcacttcctgggcgcaaacgacgagaag
atgtcctacgacaataacccttacatcaagaccctctcggacggatgcgcgacaaggaag
ggctacggaaagactgtgttggagattgatactcccaaaatcgatcaggttccaatcatc
gatgtcatgttgactgactttggggaccctaaccagaagtttgggtttgaagttgggccc
gtctgcttccttggctaa
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