Embiotoca jacksoni (black perch): 138199719
Help
Entry
138199719 CDS
T10523
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03015
mRNA surveillance pathway
eja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138199719 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
138199719 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eja03019
]
138199719 (pabpc4)
03041 Spliceosome [BR:
eja03041
]
138199719 (pabpc4)
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
138199719 (pabpc4)
mRNA cycle factors
Stress granule specific factors
138199719 (pabpc4)
Spliceosome [BR:
eja03041
]
Complex C
Other components
Complex C specific factors
138199719 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_7
RRM_10
RBD_RDR6
OB_RNB
DUF6262
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
138199719
NCBI-ProteinID:
XP_069007962
LinkDB
All DBs
Position
Unknown
AA seq
627 aa
AA seq
DB search
MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDSRLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEK
HEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQTQNRTT
YYAPNQLAQMRPNPRWQQQGGRGQGGFQGIPGSLRQPGPRANLRHMSPGSSTQGPRAAGQ
AMAPRSSMGVPGPRAMPPYKYASGVRNPNPQVVQPIALQQAQPAVHVQGQEPLTASMLAA
APPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVA
VLQAHQAKKDATQKVGSMAAPATAATS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcgacggggagttatccgatggcttctctttacgttggcgacctgcacccc
gacatcacggaggctatgctgtatgagaagttcagcccagccggaccggtgctctccatt
cgggtatgccgggacatgatcacccgcaggtcccttggatacgcgtatgtgaacttttct
caaccagctgacgctgagagagccctggacaccatgaactttgacgtggtgaaagggaag
ccaatcagaatcatgtggtcccaaagagacccctccctcaggaagtcaggtgtgggcaac
gtgttcatcaagaaccttgacaagtccattgacaacaaagccctgtacgacaccttttct
gcctttggcaacatcctctcctgcaaggtggtgtgtgatgaaaatggctccaagggctac
gcctttgtccatttcgagacccaggatgctgctgatcgggccattgagaagatgaacggc
atgcttctgaatgaccgcaaggtatttgtgggtcgtttcaaatctcgcaaggaacgagag
gctgaactcggtgccaaagcaaaagagttcaccaatgtctacatcaagaatttcggggat
gatatggatgacagtcggctgaaggaactttttgacaaatatggtaaaacactcagtgtg
aaggtgatgatggaccccaccggcaaatccagagggtttggatttgttagttatgagaaa
catgaggatgctaacaaggctgtagaggatatgaatggcaccgaactcaatggcaagacg
gtgttcgtgggcagagctcagaagaaaatggagcggcaggcggagctgaagaggaagttt
gagctgctcaagcaagaaaggattagtcgttatcagggagttaatctttacattaagaac
ctggatgacaccattgatgatgagaaactgcgtaaggagttctctccattcggctccatt
acgagcgctaaggtgatgctggaggagggccggtccaagggcttcggcttcgtctgcttc
tcctcccccgaagaggcaacaaaggcagtgactgaaatgaatggacgtatcgttggatcc
aaaccgctctacgtggctctggctcagcgcaaagaggagcgcaaagcccacctgaccaac
cagtacatgcagcgtatcgccggcatgagggcgatgccggctaacgccatcattaatcag
ttccagcccaccagtggctacttcatgccagctgtgccacagactcagaataggactacg
tactatgcacccaatcagctggcccagatgcgacctaacccccgatggcagcaacaaggt
ggtagaggtcaaggtggtttccaaggaataccgggctcactgcgtcagccgggaccgcgg
gccaacctcagacatatgagtcctggcagcagcacacagggcccacgagctgctggtcag
gccatggctcctcgttcctcaatgggagtcccgggtccccgggcaatgcctccttacaaa
tatgccagcggtgtccgtaaccccaacccccaggtggtacagcctattgccttacagcag
gctcagccagcggtgcacgttcagggccaagagccgctcacggcctccatgctggctgca
gcgcccccccaggagcagaaacagatgctcggagagcgtctgttcccactgattcaggcc
atgcacgccaacctggcaggaaagatcaccggcatgctgctggagatcgacaactcagag
ttgctacacatgctggagtcccacgaatctctgcgttcaaaggttgaagaagctgttgcc
gtgcttcaggcccaccaggcgaagaaagacgccacccagaaagtgggcagcatggccgct
cctgcgaccgctgccacatcctga
DBGET
integrated database retrieval system
