Embiotoca jacksoni (black perch): 138199738
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Entry
138199738 CDS
T10523
Name
(RefSeq) SR-related and CTD-associated factor 8-like isoform X1
KO
K13191
RNA-binding protein 16
Organism
eja Embiotoca jacksoni (black perch)
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eja03021
]
138199738
03041 Spliceosome [BR:
eja03041
]
138199738
Transcription machinery [BR:
eja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138199738
Spliceosome [BR:
eja03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
138199738
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
138199738
NCBI-ProteinID:
XP_069007998
LinkDB
All DBs
Position
Unknown
AA seq
1405 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIATFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIPPPSVTPVMPSSAAPVNNTTPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERSEDSKKDSSSSQLPMVSEPINSSLF
QHLAEQLQQQNLEQFQKQLMEHQQKAMSIEGQDSIFGQENSVMSGQSSSQQQLSELDNKL
DDSIDNQQQDMDLDEGPDGLEEEIFEAEEKKALNTRSRTRSRSRSRSPKRRRSRSRSGSR
KRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQ
VDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIGSKI
IKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGIIDQETVNDEWEAAK
NSEPAKEVTSQPVSAETSAASNTQTESYNQQVSMMPVQLPVAQAVPGAVGLVPPTFPVTM
GIPPPGYGPPPPFIRAGFNTSQPPPGYMQAAQAAGMAAAATSLVHSSVASSQDAVKDSPF
SAMIPPTSALPGSFMSSAIAGAGVFNPVGVHSQQAPNDKTPQSVDGMDAAAELTLQGMQN
AVRSGMGLLGMHPTAPLTHPLHQAGLSAQRMPGLLPLDVRPNLLQPGAAARFPLLMQQGA
VQQAAGLLESSLQAQARARTPFPQLDPFNRASTLNNENLSKAEDESSSGADEGKDQDYRF
PPMEKQSTGLLRTPPPEHRDALGGGAGGGGAGAGAGVGGRPPLLQTPGTQPARSSLVGRL
QALAGFTPDNRWNQARGDFDERDSMRGGPPAPSGPKAFQEERSTSGQNFPNRFDSRPGTA
GGAAGGSVNAGAVGGSQTWNRSGAATATFDSELHQDLDDRRRPWDRQRDRDERDFDFRRE
MNGNRHSRERDRERGRDRDRTREHERDRDRDKERDRERDRERGGWTPLLPLPTPLLPTPS
LNPNLTLNQGKLLAPLKLNPQMQQRFQSPLLPPAQAKPSLLGLNQPPPQVQMKSPPPSQS
QAAVSESQSEPPTPSETAQAQSPPSAQSPDPSSDNKAQSSSTEAPARSSPRSETPPPAES
PSRSPSKTAASPDTDTPNRASPPDEVSSPDSPVAFTLSASPPEDTTRSPEEQKNEEESHE
RASSHQPRWVNGSGIDDIAVAEPTPETSPEPTPDPSHDSLLPESDKEPQQEQLASPQDVD
SEQSEPTEEAASQPVVDTLTDTEGT
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaagcgtttaacaacgagctttactcgttgaatgagtacaagccgccg
atctccaaggccaagatgactcagatcaccaagtctggaatcaaggctatcaaattctac
aaacatgttgtccagagtgtagagaagttcatacaaaagtgcaagccagagtacaaggtc
ccggggctgtacgtcatcgactccattgtcagacagtcacgacaccagtttggcaccgag
aaagatgtttttgctccacgtttcagcaagaatatcattgcaacgttccagcacctctac
cgctgcccctcagatgataagagtaagatagttcgagtcctgaatctttggcaaaagaat
gcggtcttcaagagtgacatcattcagcctctgttggacatggcagcagggattcctcct
cccagtgtcacgcctgtaatgcccagcagtgctgccccggtcaacaacactacacctggg
accccagctacgccggccacgccagccaacatcgtccagggtctgcccgactgggcgtcg
cagattaccaacacggacaccgtggctgctgttgcacaaatattacagagtccccaggga
caacagcttcagcagctggtccagagtctgcagatgcagcagcagaagccccagccgtcc
ctgctgcaggccttggacgctggcctggtggtgcagttacaagcgctgacagctcagctc
actgcggctgcaactgccaacagcctcaaccccttggagcagagagtctcctcctttaat
aagaaacttttgggtccgtttgactttgggaacgattctgaacgtagtgaagactctaaa
aaggactcctcatcatctcaactgcccatggtgtccgagcccattaacagctccctcttc
caacatttggctgagcaactgcaacaacagaacctggagcagttccagaagcagctgatg
gagcaccagcagaaggcaatgagcatagaagggcaggactccatctttggtcaggagaac
tcggttatgtcgggtcagagcagcagccagcagcagctttctgagctcgacaataagttg
gacgactccatagacaaccaacagcaggacatggatctggacgagggcccggacggattg
gaggaggagatttttgaggcagaagagaagaaggccttaaacacgagatcaagaacacgc
tcaaggtcacgctcgaggtctcccaagaggagaagatcccggtcccgctccggctcacgg
aaacgtaagcaccgcaagcggtcccggtcccggtccagagaccgcaagaggaagtcgtcg
cggtcctactcgagtgaaagacgcgcccgcgaacgagagaaggagcggcagaagaaagga
cttcctcccatacgatccaagactctcagtgtgtgcagcacaactctgtgggtgggacag
gtggacaaaaaggcaactcagcaagacctcaccaatctgtttgaagagttcggtcagatc
gagtctatcaatatgatccctcccagaggctgtgcctacatctgtatggtccacaggcag
gatgcgtaccgggcccgccagaagctcagcacgggctctttcaaaattggttccaagatc
atcaagattgcatgggctctgaacaaaggagtaaagcaggagtacaagcagttttgggat
gtggacttgggagtgacctacataccctgggagaaggtcaaggtggatgatctggacggc
tttgctgaaggagggatcattgaccaggagaccgtcaatgatgagtgggaagcagccaag
aactctgaaccagccaaggaagttacaagtcagccagtaagcgctgagacttcagcagca
tctaatacccaaactgaaagctacaaccagcaggtctccatgatgcctgtacagctccca
gtggcccaggcggtccccggtgcagtaggtctggtgcctcctaccttccccgtcaccatg
ggaatacccccaccaggctacgggccgccaccacccttcattcgagccggcttcaatact
tcacagcctccaccaggttatatgcaggctgctcaggcagcagggatggctgcagcagcc
acttctcttgtgcattcttcagtggcctccagccaagacgctgtgaaggattcaccgttc
agcgctatgattcctccaaccagcgctctccctggcagcttcatgtcttcagccatcgca
ggagctggtgtgttcaacccggtgggagtgcacagtcagcaggcccccaacgacaagact
cctcagtctgtagacggtatggatgcagctgcagagctcacactgcaaggtatgcagaat
gcagtccgcagtgggatgggtctgctgggcatgcaccctacagcccccctcacccacccg
ctgcatcaggcaggtctgagcgcacagagaatgcctggcctgctgccactggatgtgcga
cctaacctcctccaacctggggccgctgcccgcttcccgctcctgatgcagcagggcgct
gtccagcaggccgctggcctcctggaaagttccctccaggctcaagcccgtgccagaact
cccttccctcagctggaccccttcaacagggcctcgaccctcaacaacgaaaacctatct
aaagcagaagacgagtcttcctctggggctgacgagggcaaagaccaggactaccgcttc
cctccgatggagaagcagagcacaggcctgctgcggacccctccaccagagcacagggat
gcccttggaggaggagcaggaggaggaggagcaggagcaggagcaggagtaggaggcaga
cctcccttgctccagacccccgggactcagccagccagatccagcctagtaggacgtctg
caggctcttgcaggctttactcctgataatcgctggaaccaggccagaggggactttgac
gaacgagatagcatgcgaggaggcccgccggccccaagtggcccaaaagccttccaggag
gagcgctccacctccgggcagaacttcccaaatcgctttgacagccgtccggggacagcg
ggaggagcagctggtggttctgtgaatgccggagctgttggggggtcgcagacctggaac
cgtagtggtgccgccacggctacttttgatagtgaactacatcaagacctcgatgaccga
agacgcccgtgggaccggcaacgagatagagatgaaagagattttgactttcggagagag
atgaacggtaaccgccacagccgtgagagagaccgggagcgaggccgagaccgagaccgc
accagagagcacgagcgtgaccgagaccgggacaaagagagggaccgtgagagggaccgg
gaacgtggaggctggacgcctctcctcccgctgcccacacctctgcttccaactccatct
cttaatcccaacctgactctgaaccaaggcaaactgctcgccccgctcaaattaaaccct
cagatgcagcaacgattccagtccccgcttttgcctccagctcaggccaaaccttctctg
ctgggtctgaatcagccgccgccgcaggttcagatgaagtctcctcctccgtcacagagc
caagcggctgtgtccgagtcccagtcagaacccccgactccatctgagacggctcaggcg
cagtctccaccttcagctcagtcacctgacccatcctctgacaacaaggctcagagcagc
tcgactgaagctcccgctcggtcgtcgcctcgatcagagaccccgcctcccgcagagtcc
ccgtcccggtccccctccaagacggctgcttctccagacactgacaccccaaaccgagcc
tcgccgccggacgaggtttcgtccccggactcacctgtggccttcacactatctgccagc
ccccccgaagatacgactcgctctccagaggagcagaagaacgaggaggagtcacacgag
agagcctcctcgcaccagccacggtgggtcaatggatctgggatagacgatatcgccgtg
gccgagcccacgcccgagacctctcctgagcccactccagacccttcccatgattctttg
ctccctgaaagtgacaaggagccgcagcaggagcaacttgcctctcctcaggacgtagac
agtgaacagagtgagcccacggaggaagctgcgagtcagccagtggtagacactctcaca
gacactgaggggacataa
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