Embiotoca jacksoni (black perch): 138200531
Help
Entry
138200531 CDS
T10523
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03013
Nucleocytoplasmic transport
eja03015
mRNA surveillance pathway
Brite
Enzymes [BR:
eja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138200531
5.6.2.5 RNA 5'-3' helicase
138200531
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138200531
mRNA cycle factors
Common to processing body (P body) and stress granule
138200531
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
138200531
NCBI-ProteinID:
XP_069009408
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLENQVNG
PDEGLHNGGVDDPVGKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSIPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGGMKGKLGRGGRQRLRGSGNQGGSQGNGP
NSQVSQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaggaa
acggagctgctcggagcggacacccagggttccgagtacgatttcaccgacttcaccctt
cccagccagacgcaaactcaaggccagacccagagtcagctggaaaaccaggtaaatggt
cccgacgaggggcttcacaacggcggagtggacgacccggtgggcaaagccagccagttg
ttggccgagttaaactttgaggaggatgaggaggacacgtactacaccaaagacctgcct
gtgcacgcttgcagctactgtggtatccacgacccagcgtgtgtggtttactgcaacacc
agcaagaagtggttctgtaatggacgtggcaacacatctggcagccatatcgtgaaccat
ctggtgagggccaaatgcaaagaagtgacgctgcataaagatgggccgctgggcgaaacc
gtgctcgagtgttacaactgcggctgccgcaacgtcttcctcctgggcttcatccccgcc
aaggccgattctgtggtggtgctgctctgcaggcagccctgtgccagccagagtagcctg
aaggacatcaactgggacagctcacagtggcagccactgattcaggaccgctgctttctg
tcctggctggtgaagatcccatcagagcaggagcagcttcgagcccgtcagatcaccgcc
cagcagatcaacaagctggaggaactctggaaggacaatcccactgccaccttggaagac
ctggagaaacccggtgtggacgaggagccccagcacgtgctgctgcgctacgaggacgcc
taccagtaccaaaacatatttggccctttggtcaaactggaggcagactacgacaagaag
cttaaggagtcacagactcaagataatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctattttacactgcccaagacggattcaggtgatatgcggctgatgcaa
ggtgatgagatctgccttcggtacaaaggagacttggccccgctgtggaagggcatcggc
catgtcatcaaagtccctgacaactacggggatgaaattgccattgagttgcggagcagt
gtcggagcccctgtggaaatcccacacaacttccaggtggactttgtgtggaagtccact
tcctttgacaggatgcagagcgccctgaagacgtttgctgtggacgagacctctgtgtct
ggctacatttaccacaaactgctgggtcatgaggttgaggatgtcaccatcaagtgccag
ctgccaaagcgcttcactgcccagggcctgcccgacctcaaccactcacaggtgtacgct
gtgaagacggtactgcagagacctctcagtctgatccagggtcctccaggcacaggaaag
accgtcacctctgccacaattgtgtatcacctgtccagacagggaaatggaccagttctg
gtgtgtgctcctagtaacatcgctgtggaccagttgaccgagaagatcgacaagaccggg
ctgaaggtggtcaggctttgtgccaaaagccgggaggctatcgagtcaccagtttctttt
ctggctctgcacaaccaaatcagcaacatggacagtataccggagcttcagaaactacag
cagctgaaggatgagactggtgagctgtcgtcagctgatgagaagcgttacagggctttg
aagcgcactgcggagagggagctgctcatgaatgccgatgtgatctgctgcacctgtgtt
ggagctggagaccctcgtctggccaagatgcagttccgttccatcctgatcgacgagagc
acccaggccaccgaacccgagtgcatggtgccggtggtgctgggggccaagcagctcatt
ctggtgggtgaccactgccagttgggtcctgtggtgatgtgtaagaaggcggccaaggcg
ggcctgtcccagtccctgtttgaacgcttggtggttctgggaatccggccaatccgcctg
caggtccagtaccgcatgcacccggctctcagtgccttcccctccaacatattctacgag
ggctccctacagaatggtgtcacggcagctgaccgcatcaagaaaggatttgacttccag
tggccacagccggataagcccatgttcttctacgtgactcaaggtcaggaggaaattgcc
agctctggaacctcgtacctcaacaggactgaggctgccaacgtggagaaaattaccacc
aggttgctgaaggcaggagccaaacctgatcagatcggcatcatcaccccatacgagggt
cagcgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaaactctat
cagcaagtggaaatagccagcgtggacgcctttcagggcagagagaaggacttcatcatc
ctgtcttgtgttcgcgccaacgagcaccagggcatcggcttcctgaatgacccccgacgt
ctcaacgtggcgctgaccagagccaagtatggcgtgatcattgtggggaacccgaaggct
ctctccaagcagccgctgtggaacaacctgctgaacaactacaaggagcagaaggtgctc
gtggagggacctctcaacaacctgagggagagcctcatgcagttcagcaagccccgcaaa
ctggtcaacaccatcaacccaggggggcgttttatgagcactgccatgtacgatgcccgc
gaggccctcattcctggctctgcctacgaccgcagcagtgctgctggacgtccgtccaac
atgtactttcaaacacacgaccagatcgggatgattggggcgggccccggtcacatggct
gctatgaatattcccataccgttcaacctggtgatgccgcccatgcctccacccagctac
ctgggtcagaccaatgggcccgctgcaggtcgtggaggtatgaagggtaaactggggcgt
ggcgggcgacagaggctccgaggttcaggaaaccagggtggcagtcagggcaatggaccc
aacagccaggtcagccaggatggggcctctcagtccttctcccaagggccgctgacccag
ggctacatctccatgagccagccctctcagatgagccagcctggcctctcccagccagag
ctgtcccaggacagttacctgggcgacgagttcaagtcccagatcgatgtggctttgtcc
caggactcgacttaccagggtgaacgtgcgtaccagcatggcggggtgactggactgtca
cagtactaa
DBGET
integrated database retrieval system
