Embiotoca jacksoni (black perch): 138200986
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Entry
138200986 CDS
T10523
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja04382
Cornified envelope formation
eja04510
Focal adhesion
eja04512
ECM-receptor interaction
eja04518
Integrin signaling
eja04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138200986 (col4a2)
04518 Integrin signaling
138200986 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138200986 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138200986 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138200986 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
eja04147
]
138200986 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
eja00536
]
138200986 (col4a2)
Exosome [BR:
eja04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138200986 (col4a2)
Glycosaminoglycan binding proteins [BR:
eja00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138200986 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
138200986
NCBI-ProteinID:
XP_069010142
LinkDB
All DBs
Position
Unknown
AA seq
1675 aa
AA seq
DB search
MQGQHNTGQKNLRLLLLCLFVAILASGAHAGGKKHSGPCGGRDCSGGCKCFPEKGARGAP
GPLGPQGPHGPSGRPGDPGIEGPKGQKGDSGRGGMIGLKGNMGMTGVPGFSGNNGIPGHP
GQAGPRGKPGADGCNGTHGEPGLPGGSGYDGGTGFPGQPGRKGEKGETLEISVYMQRFRG
DPGAPGLNGIFGPTGNPGWQGNRGLQGPKGPPGPPGPRGSKGTMTKVFKGLKGDQGDIGP
PGQPGNSTHQHALPPSGHQQQGPPGEKGLKGESGDLADNRGEKGVVGLPGPRGPGGANGR
PGPRGDPGETGPKGRDGLKGVMGDRGDLITSESLWPGSSTAGPPGPPGEQGPQGERGPVG
DQGFPGPPGRPAFETQQQVWDFFGPFGFKGDQGEKGQQGEPGHPAVSAGPPGADGRPGDR
GSPGPKGTWAEFFKGAPGGGGRPGNAGSKGVKGDHGECVCTNGNSPPGLPGPAGEVGDPG
MTGEFGREGDLGDPGLIGDDGLSGLPGPGGVPGPKGQKGKASVAMEKGYPGEPGDSGKDG
VAGASGAPGLNGLPGVPGSQGLPGEGPRGAHGDKGFPGFPGQPGAAGLRGEAGSDLRGFK
GQRGLPGDDGLVGYHGVPGTLGSPGGCSPTGDGGQVDVTGLCKAFPGPPGPPGLPGPSGS
PGFQGLPGQKGITGSYGVKGEKGEQGDQGLGGRPGPPGFAGPRGDLGVPGIKGSVGVPGS
SGMPGRYGIQGEKGVHGEILGASFGQPGDPGRSGLQGDKGQSGDPGEQGYPGMDGMPGMI
GFKGLSGPAGLEGKLGKPGPAGNYGFPGDPGRGGSPGPHGATGQPGVTGERGTEGNPGPP
GPAGLKGIPGAYGEDGAIGDYGQPGNPGQPGPGGHPGLPGMKGYKGSHGMSGFLGVKGEQ
GLAGFSGSKGESGVLGLVGPKGVEGQSGEKGDRGLRGPPGEKPQIPAQMIVDMKGTKGEH
GKFGNQGFVGSRGTKGFPGVPGFEGTHGLPGDPSNEKGYYGDPGAQGLPGIKGMPGPTGN
RGITGFEGMSGNKGIKGSPGAYGASGDEGRKGPKGEKGLSIDIPGSTGLRGEDGIPGDPG
QEGLSGPTGDRGVPGFDGIKGKKGTSGFPGISGYPGSDGQKGTPGNQGQKGFPGTPGKEG
HPGSPGFPGNKGYPGLKGLYGLYGLKGQKGLTGTPGQDNFGPAGESGPTGQKGESGDPNN
QPGFPGTAGLKGFQGPLGDHGQPGLPGLRGPEGPDGTPDKPGPGGDPGFGGPAGYRGFPG
AQGTPGVDAPPGEKGVPGSDGFPGFPGAKGFKGDYGPTGYRGPNGVSGKKGVKGGQGLMG
VPGTIGVKGERGPAGPKGGTGLTGVPGPPGKQGLPPIPTRVPGERGPSGPQGIQGPKGGK
GETGPRGPPGNSGFMGPIGQKGMPGISGTPGMPGFRGELGQVGHPGLQGMEGHRGNPGIQ
GLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGS
CLPRFSIMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCEAP
SVAIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTAPFI
ECNGAKGTCHYFANKHSFWLTSVEQSFHTEPAAETLKAGQLLSRISRCQVCMKNL
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggacaacacaacacagggcagaagaatctgaggctgctgcttttgtgcctcttc
gtcgccatcctcgcctcgggagcgcacgcaggtgggaagaagcacagcggcccctgtgga
ggacgagactgcagcggaggctgtaaatgtttcccggagaagggtgccaggggtgcccct
gggcctcttggtccacagggcccacatgggccttcggggagaccaggggatccaggtatc
gagggtccaaaagggcagaaaggtgacagtggccgtggtggcatgattggtctcaaagga
aatatgggaatgaccggtgtgcccgggttctctggaaacaatggtattcctggccacccc
ggacaagctgggcccagggggaagccaggtgcagacggctgtaacgggactcatggagaa
ccagggttaccggggggatccggctatgacggcggaacgggttttcctggacaaccaggc
aggaagggagagaagggagaaactctggaaatcagtgtgtacatgcagcgtttcagggga
gatccaggcgcaccaggactcaatggaatatttgggcctacaggaaatccagggtggcaa
ggtaacagaggcttacaagggccaaagggtcccccagggcctcctggtccccgtggatca
aagggcactatgaccaaagtgttcaaaggactcaaaggagaccagggggacattggacca
ccagggcaaccaggaaactcgactcaccagcatgctctgcccccctctggacatcagcaa
caaggacctcctggagagaaaggtctgaaaggagaaagtggagatctggcagacaacaga
ggagaaaagggtgttgtgggattacctggaccgcggggaccagggggtgcaaacggaaga
cctggaccaaggggagatcctggtgaaacaggaccaaaaggcagagatggtctgaaggga
gtcatgggtgacagaggagacctgattacatcagaatctttgtggcctgggtcttcaacg
gcagggccccccggtcctcccggcgagcagggaccacaaggagagaggggaccagtagga
gatcaaggcttccccggaccccccggacgtcctgcctttgaaacacagcaacaagtgtgg
gatttcttcgggccctttggtttcaagggagaccaaggagagaagggccaacaaggagaa
ccaggacaccctgctgtcagcgcgggacccccaggagctgacgggcgtccaggagacaga
ggctctcctggaccgaaaggaacatgggcagagttctttaagggagctcccggaggagga
ggaaggcccggcaatgcaggctccaaaggagtgaaaggtgatcacggagaatgtgtgtgc
accaatggaaactctcctcctggtttgcctggccctgctggcgaggtcggtgatcctggg
atgactggagagttcggtcgggagggcgatttaggagatccgggtctcatcggagatgac
gggctttctggacttcctgggcccggtggcgtgccagggccaaaaggacaaaaaggaaaa
gcaagtgttgccatggagaaaggatatcccggtgaaccaggggattcaggaaaagatggt
gtggcaggagcatcgggtgctccaggcctgaacggtcttcctggtgtccctggcagtcaa
ggtcttccaggagaagggccccggggagcacatggagacaaaggtttcccgggatttcct
ggtcaacccggtgcagccgggctcaggggagaggcaggttcagaccttcgggggttcaaa
ggtcagcgtggtttacctggtgacgacggcctcgttggttatcatggagttccaggaaca
cttggcagtccaggcggctgtagtccgacaggagatggaggacaggtggatgtaacaggt
ctttgcaaggcttttccaggacctcctgggcctcctggacttccaggacccagtggatca
ccaggtttccaaggtcttcctggccaaaaaggaataacgggttcatacggagtaaaagga
gagaaaggagaacaaggagatcaaggcctgggtggtcgtcctggaccaccaggttttgcg
ggcccccgtggagacttgggagttcctggcatcaaaggatcagttggagtccctggttcc
tctggtatgccgggcaggtatgggatacagggtgagaagggtgttcacggagaaatctta
ggagcatcatttggacagcccggtgatccaggacggtctgggcttcaaggagataagggc
caaagtggagatccaggcgagcagggctatccaggaatggatggcatgcctggtatgatt
ggcttcaaggggttgagtggccctgcaggcctggaggggaagttaggaaaacctgggcca
gcaggcaattatggcttccctggtgatcctgggagaggaggttcacctgggccacatggt
gctacaggacagccaggtgtgactggtgaaaggggaaccgaaggaaacccgggccctcca
ggtccagcaggattaaaggggatcccaggggcatacggtgaggacggtgccatcggagat
tacggccaaccaggtaatccgggacagccaggtccaggcggacacccaggacttccagga
atgaaggggtacaaaggctcccacggcatgtcaggttttttgggggtcaagggtgaacaa
gggttggctggcttcagtggctcgaaaggagagtctggagtgctgggcctagttggccca
aaaggagtggaaggccaaagtggagaaaaaggtgatcgtggtctgaggggaccgcctgga
gagaagcctcaaatccccgctcaaatgattgttgacatgaagggaaccaaaggagaacat
ggaaagtttggaaatcaagggttcgttgggtcaagaggtactaagggtttccctggtgtg
ccgggcttcgagggaactcacggtcttcctggagaccccagcaatgagaaaggttattat
ggagatccaggtgcacaggggctaccagggatcaaaggaatgccggggccaactgggaac
cgaggaattacaggttttgagggaatgtctggcaacaagggaattaaaggaagtcccgga
gcctatggtgcatcaggtgatgaaggaaggaagggacctaaaggtgagaaaggccttagt
atagacataccaggatctactgggttgagaggagaggatggaattccaggagacccaggt
caggaaggattaagtggaccgacaggtgacaggggtgttcctggttttgatggtatcaaa
ggtaaaaagggcacgtcaggttttccaggaatatcaggatacccaggctcagacgggcaa
aagggcactcctggtaaccaaggccaaaagggctttcctggaactcctggaaaagaagga
cacccaggctctcctggcttcccaggaaacaagggttaccctggcttgaagggtctttat
ggactatatggattgaaaggacaaaaggggctcacaggaacaccaggtcaggacaacttt
ggaccagctggggagtcgggacctacaggacagaagggagagagcggtgaccccaacaat
cagccaggttttccaggcacagcgggtttgaagggctttcaaggacccctaggtgaccat
ggtcagccgggactgccgggactccgaggccccgaaggaccagacgggaccccagacaaa
ccaggaccaggcggagaccccggctttggaggacctgcagggtaccgaggttttcctgga
gcccaagggactcctggtgtggatgctccaccaggagaaaagggtgttccaggatcagat
gggtttcctggatttcctggtgcgaaaggattcaaaggagattatggtccaactggatac
agggggcccaatggtgtttctggaaagaaaggagtgaaaggagggcaaggattgatggga
gttcctggcacaattggtgtaaagggagaaagaggaccagctggtcccaaaggaggcacc
ggactcacaggtgttcctggaccccccggcaaacagggtcttcctccaattcccaccagg
gttccaggagagaggggtccctctggaccacagggtatccaaggaccaaaaggaggtaaa
ggagaaacaggaccccggggcccccctgggaattcagggttcatgggacccatcgggcag
aaaggcatgcctgggattagtggtacaccgggaatgcctggtttccgtggagagcttgga
caagtgggccaccctggtctgcaaggcatggaaggtcaccgtggcaaccctggtatccag
gggttacctggtatgcctggccgcagtgtcagcgtgggctacttgctggtgaaacacagt
cagtcggaacagacacccatgtgtcctgtggggatgtccaaactgtgggacggctacagc
ctgctgtacctcgagggccaggaaaaggcccacaaccaggatctcggtttggctggctcc
tgcctcccacgcttcagcatcatgcccttcctgtactgcaaccccggagacatttgttac
tacgccagcagaaatgataagtcctactggttgtcaaccaccgctcctcttcccatgatg
cctgtagaagaaggagagatcaaaccgtatatcagccgctgctcagtatgtgaagctcca
tcagtcgccatcgcagttcacagtcaggacatcaccatccctcagtgtcctgcgggctgg
agaagcctgtggattggctactcgttcctcatgcacacggcagcaggaaatgaaggcggc
ggtcagtccttgtcgtcgcctggctcttgcctggaggatttccgcacagcgccgttcatt
gagtgtaacggggccaagggcacatgccactactttgctaacaagcacagtttctggcta
acctccgtagagcagtcgttccacaccgagccagcggcagagacgctcaaagcagggcag
ctcctgtcacgcatcagccgctgccaggtctgcatgaagaacttgtga
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integrated database retrieval system
