Embiotoca jacksoni (black perch): 138200987
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Entry
138200987 CDS
T10523
Symbol
col4a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja04382
Cornified envelope formation
eja04510
Focal adhesion
eja04512
ECM-receptor interaction
eja04518
Integrin signaling
eja04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138200987 (col4a1)
04518 Integrin signaling
138200987 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138200987 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138200987 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138200987 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
eja04147
]
138200987 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
eja00536
]
138200987 (col4a1)
Exosome [BR:
eja04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138200987 (col4a1)
Glycosaminoglycan binding proteins [BR:
eja00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138200987 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
138200987
NCBI-ProteinID:
XP_069010145
LinkDB
All DBs
Position
Unknown
AA seq
1640 aa
AA seq
DB search
MLLPSGTLLLLAALYSCVHLTGSEGCGASCGKCDCSGVKGAKGERGFPGLQGNMGFPGMH
GPEGPPGPMGPKGDLGEPGATGLKGVRGPPGLPGFPGNPGLPGINGNDGPPGMHGIPGCN
GTKGDRGRDGTSGFPGLQGPPGIPGIPGMKGDPGGVFGITPMKGERGFSGVPGTPGLPGP
PGPTGPPGIHGYQGPKGDAGPPGPPGEKGDKLAFVSEKGDKGDRGYQGPPGPPGLPMGVE
GGHITVHIPGPPGYKGPQGDKGEKGFCTPYLDGVKGDPGPHGQRGKPGKDGDNGLKGEQG
FPGAPGYPASQGEKGEKGPPGYGSGAPGPPGPLGLPGLEGEKGFPGPQGEAGPPGRHIEG
PQGERGPKGDVGGKGDRGVEGESLVGPPGQQGLSGPPGSPGQPIDPNECDIERGAPGPAG
PPGLQGELGQKGDKGDTCAQCDGVGPAGIPGPEGPKGERGPPGPVGGKGEKGLSGLPGQS
GRPGNQGTPGLMGTPGAVGEPGDIFLAPSLKGDKGLPGVAGSPGQPGLDGLPGRDGFPGQ
HGHKGEPASEGIKGERGLDGDPGLIGVPGERGPPGVPGFGRSGEPGEKGSEGRQGLPGTP
GIPGLKGEPGQGVSTPGPQGVPGPRGESGITGLQGDRGHVGDPGLPGFPGDKGESGPPGI
GFPGPTGPKGISGIPGATGLTGEPGKTGQDGLTGKPGPPGQKGEAGRGLPGPKGSQGHPG
ITGYQGEKGSIGLPGVPGREGQTGPPGSQGIQGESGPPGPPGQAGIPGVPGKGSSGAPGP
QGPPGEPGPYGREGVKGEKGYPGPPGLDMPGPQGEKGTLGFPGAPGSKGQQGTPGLPGRD
GQIGNQGFKGEMGVMGTPGVPGFPGSPGKFGPPGLRGDPGITGARGDIGDIGSKGERGEP
GLQGPPGNMSEVDMEHMKGEKGDIGHIGNTGITGEKGHRGLQGDPGMPGKDGEPGLPGQP
GEKGDLGFPGEPGNIGTPGQKGTVGEMGIPGGAGPKGSKGDFGTPGHPGFRGTDGEKGDS
GSPGEPGIGIPGHPGERGQTGQPGFPGSPGEKGQRGHEGMPGKPGVEGPKGDKGGTGYTG
QGGRPGEKGIPGLPGSAGEPGHDGRPGEGGMQGPLGPHGEKGEPGVDGIPGSSGERGDPG
LPGHGMPGLPGALGIKGDKGSFGFPGTPGNPGVPGIKGDKGLPGPQGHQGEGGERGLPGN
SQEGPKGDRGESGQPGETGSQGAPGPSGVPGRDGQKGVKGDQGLPGFQGESGHKGDPGVN
GLPGQSGLPGIDGQKGERGLQGVPGFPGTKGIVGDGGFQGEVGDRGFPGEKGNDGSPGPP
GPKIFIKGDIGFPGLQGLPGPQGPSGFPGQKGQQGVTGTSGPKGDEGLPGYHGQPGAKGD
GGLPGPQGPRGYPGPPGPDGVPGQVGHPGPSSMDHGFLVTRHSQTVEVPNCPDGTTLIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGQSIKPFISRCAVCEAPAMVIAVHSQTIMIPSCPKGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDEEMFTKPVPTT
LKAGNLRTHISRCQVCMKRT
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtccggcactctgttactgctggcggctctctactcctgtgtacatctg
acaggatcagagggttgcggagcatcatgtggaaaatgtgactgcagtggtgtgaaagga
gcaaagggtgagcgtggatttcctggtcttcaaggtaatatgggattcccggggatgcat
ggaccagaggggcctccagggccaatgggccccaagggagatctgggtgagcctggagct
actggactgaaaggtgtacgaggtcctcctggtctgccaggtttcccaggaaacccagga
ctaccaggcatcaatggaaacgatggtccacctggtatgcatggtatcccaggatgcaat
ggaactaaaggagacagaggaagggatggcacttctggttttcctggtcttcaagggcct
cctggcatcccaggaattcctggaatgaagggtgaccctggtggtgtgtttgggattacc
cccatgaagggagagagaggattctctggtgtacctggaacacctggattacctggccct
cctggacctaccggacctccaggaatccatggttaccagggaccgaagggtgacgctggc
ccccctggccctcctggagagaagggtgacaagctggcctttgtgagtgagaaaggagat
aagggtgaccgaggatatcagggcccaccgggcccccctggactcccgatgggagtggaa
ggaggacatatcacagtgcacatacctggaccaccggggtacaaaggacctcagggagat
aaaggagaaaaaggcttttgcaccccttatcttgatggtgtcaaaggtgatcccggccca
catggacaaagaggtaaacctggtaaagatggagacaatgggctaaagggtgaacaaggt
tttcctggagctcctggataccccgcttcccagggtgaaaaaggagaaaaaggaccacct
ggttatggtagtggtgcacctggccctccaggccctttgggtctcccagggttggaagga
gaaaaaggttttcctggtcctcagggagaggcaggtcctccaggccggcacattgaagga
cctcagggagagaggggcccgaagggagatgtgggtggaaagggagacaggggtgtagag
ggagagtctcttgttggtcctccaggacaacaagggctcagtggaccacctggatcaccc
ggacaaccaattgaccccaatgaatgtgacattgagaggggagctcctggccctgctgga
cctccaggattacaaggggaactgggacagaaaggtgacaaaggagatacctgtgctcaa
tgtgatggcgttggccccgctggaatacctggccccgagggcccgaaaggagagcgagga
cctcctggtccagtgggtggcaaaggagaaaagggtctttctggacttcccggacaatct
ggaagacctggtaatcaaggaacacctgggttgatggggacccctggtgctgttggcgag
ccaggagatattttcttagctcctagtctgaagggggacaaaggtcttcctggtgttgct
ggttcaccgggacagccagggctggatggactaccagggagagatggtttcccgggtcaa
catggacacaaaggagaacctgccagtgagggcatcaagggtgaacgtggactagatgga
gaccctggtcttattggggtcccaggagagaggggtccacctggtgtgccaggttttggc
cgatcaggggagcccggagagaagggcagtgagggaagacagggacttcctggaactcct
ggaataccaggtttaaagggtgagcccggtcaaggtgtgagcactcctggacctcagggg
gtccctggaccacgaggagaatccggcataactggactgcaaggtgacagaggccatgta
ggagatccagggttgccaggttttcctggagacaaaggtgaaagtggacctcctggaatt
ggatttccaggcccaactggtcctaaaggaatcagtggaattccaggagctacaggatta
acaggagagccaggaaaaacaggacaggatggcttgacaggaaaacctggtccacctgga
caaaaaggtgaagctggacggggtcttccaggtccaaaaggttcacagggtcacccagga
atcactggttaccagggagagaagggtagcattggactgcctggtgttcctggacgagaa
gggcagacaggaccacccggatctcagggcatccaaggtgagtcggggcctccagggcct
cctggacaggctggcataccaggtgttccaggaaaaggctcgtctggagctcccggacca
caaggaccacctggagagcctggaccatacggaagggaaggtgtaaaaggagaaaagggc
tacccaggtcctcctggtctagacatgccgggccctcagggagagaaggggacccttggg
ttccccggagccccaggttcaaaaggacagcaggggactccaggcttaccaggcagggat
ggacaaattggaaaccaaggttttaaaggtgaaatgggggtcatgggaacaccgggagta
ccaggatttcctggatcacctggtaaatttggacctcctggtctgagaggtgatcctggt
attactggagcaagaggtgatattggagacattggatctaaaggtgaaagaggagagcca
ggtcttcagggacctcctgggaacatgagtgaagttgacatggagcacatgaagggggag
aaaggagacatcggacacataggtaacactgggatcactggagagaagggccaccgtgga
cttcaaggagaccctggaatgccgggcaaagatggagagcctggattacctggacaacca
ggtgaaaagggagatcttggttttcctggagagcctggcaatataggaacacccggacag
aaaggcactgtgggagagatgggaataccaggtggggctggtccaaagggtagtaaagga
gattttggtacaccaggacatcctggattcagaggcacagatggagaaaaaggagatagc
ggatcacctggtgagccaggtattggcatccccggacatccaggagaaaggggtcagacc
ggccagccaggattcccgggatcacctggagagaagggtcagaggggtcatgagggtatg
cccggcaagccaggagttgaaggacccaagggagacaaaggagggactgggtatacaggt
cagggaggtagaccaggggagaagggtatcccggggcttcccgggtctgcaggagaacct
ggtcatgacggccggcctggtgagggtggcatgcagggacctcttggtcctcatggagag
aagggagagcctggagtggatggcatcccgggatcctcaggggagagaggagacccaggt
ctacctggtcacgggatgccagggctgcctggagcgcttggtatcaaaggtgacaaaggt
agttttggcttccctgggactccaggtaatccaggtgtccctggtatcaaaggtgacaag
ggacttcctggcccacagggacaccagggtgagggaggagagaggggtcttccaggtaac
tctcaagaaggccctaaaggagacaggggagaatcaggacaacccggagaaacaggatca
caaggagcaccaggaccttctggcgtgccaggacgagatggtcaaaagggagtgaaggga
gatcagggtcttcctggtttccagggagagtcgggacacaagggtgaccctggagttaac
ggacttcctggacaatctggccttccaggtatcgatggtcagaagggagagagaggatta
cagggtgtccctggcttcccaggtacgaagggaattgtcggggacggtgggttccaagga
gaagttggagacagaggattcccaggagagaaaggtaatgatggctctcctggtcccccc
ggacccaaaatcttcatcaaaggagacattggttttccaggacttcagggcctgccggga
cctcaggggccgtctgggttccctggacagaaaggacagcaaggtgtgacgggtacttca
gggccaaaaggtgatgaaggtctccctggatatcacggtcagcctggagccaaaggagac
ggcggcctgccggggccacaaggacccagaggataccccgggcccccgggacctgatggt
gttccaggtcaagtgggtcatccaggcccctcatccatggatcacgggttcctggtaaca
cgtcatagccaaacagtggaggttccaaattgtccagatggaactacgctcatatatgac
ggctactccttgctctatgtacaaggcaatgaacgctctcatggccaagacttaggtacg
gcaggcagctgtctaagaaagttcagccccatgcccttcctgttctgcaacatcaacaac
gtgtgcaacttcgcctctcgtaatgattactcctactggctcacctcacctgagcccatg
ccaatgagcatggcgcccatcactggtcaaagcattaaacccttcatcagccggtgtgct
gtatgtgaagccccagccatggtgatagcagttcacagtcagaccatcatgattccatct
tgccctaaaggctgggactctctgtggattggctactcctttgtcatgcacaccagtgcc
ggtgctgagggttcgggtcaggctttggcctctcctggttcctgcctggaggagttccgc
agtgctccattcattgagtgtcacggtcgaggaacctgcaactattacgccaactcctac
agcttctggctcgctaccatcgaagatgaagagatgtttacgaaacccgtcccgacaacg
ctaaaagcaggcaatctccgaacacacataagccgctgtcaggtgtgcatgaagaggaca
taa
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