Embiotoca jacksoni (black perch): 138201117
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Entry
138201117 CDS
T10523
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03013
Nucleocytoplasmic transport
eja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138201117 (upf3a)
03015 mRNA surveillance pathway
138201117 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eja03019
]
138201117 (upf3a)
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138201117 (upf3a)
mRNA cycle factors
P-body specific factors
138201117 (upf3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
Motif
Other DBs
NCBI-GeneID:
138201117
NCBI-ProteinID:
XP_069010398
LinkDB
All DBs
Position
Unknown
AA seq
466 aa
AA seq
DB search
MRSEKDQMTVGKEKSVVEIQFRDVPREQEGTGINPKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLCPHLFSRAYINFKNPDDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRMKDKSDTGEADRGKWEKAGGQMKSK
DPKEKGQPESDKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRAKKEGHHHYSYCPDGGDKMGKEDREDLGNRKERLRNKVSEKDRPAMQLYQPGARNRK
RMSSSGKGYDCIPAGHSPEPRAEHCYDVVTMATGLEKAFEKGKDDQ
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgagaaggaccagatgaccgtgggcaaggagaagagtgtcgtcgaaatacag
tttcgggacgtcccaagagagcaagagggcaccggcattaaccccaagcagaaagaggag
aagaaagaggtctttacgaaggttgtgattcgaaggctcccgccaaacctgtcaaaggac
cagctagaagagcagctaagtccacttccatcgtacgactactttgaattcttcccagca
gatcaaagcctctgtccccacctgttctccagagcgtatatcaatttcaaaaacccagat
gatatcttgctgttcagggaccgatttgatggctacgtcttcattgacaacaagggccag
gagtatcctgcggtggtagaatttgcccccttccagaagatttccaagaagaagctgaaa
aagaaagatgccaaagctggaagcattgaagaagacccagaatataagcggttcttggag
aattactcctgcgatgaggagaagtctatggccaaccccgagaccctgctgggggagatc
gaggccaagaccagggagctcatagccaaacggacgacaccgctgctggagtacatcaaa
aataagaaaatcgagaaacagagaataagagaggagaagagagaagagaggaggaggaga
gagcttgaaaagaagcgacaaagggaagaggaaaagaggaagcgacgagaggaagagaga
cgcaagcgaaaagaggcagagaagcagaaaaagttgtctgataaagacattaaaattaag
ctcctgaagaagagtgacagagatgatgatgtggattcagaccgaatgaaggacaaaagt
gacaccggagaggcggacagagggaaatgggagaaagctgggggacaaatgaagtcaaag
gaccccaaagaaaaaggtcagcctgagagcgacaaggagcagcgagagcagcacggacgc
agacagagagacaaggatcaccgagggaaagatgaagagaggaagcgacagcgacaccac
tacgaatttgacaagttcatgcgccggaaagatgagaccaaatggggaaagggatactgc
caggaccgggccaagaaagaggggcaccatcactactcttactgccctgatggtggagac
aaaatgggaaaggaggacagggaggacctgggtaataggaaggagcgcctccgaaacaag
gtgagcgagaaggaccgtcccgccatgcagctctaccagccgggcgctcgcaacaggaag
cgcatgagctcgtcgggcaaaggctacgactgcatccccgcgggccactcgcccgaaccc
cgggcggagcattgctacgatgttgtcaccatggcaacggggctggagaaagcgtttgag
aaaggcaaagacgatcagtga
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