Embiotoca jacksoni (black perch): 138201384
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Entry
138201384 CDS
T10523
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
eja Embiotoca jacksoni (black perch)
Brite
Exosome [BR:
eja04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
138201384 (col18a1a)
Proteoglycans [BR:
eja00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
138201384 (col18a1a)
Glycosaminoglycan binding proteins [BR:
eja00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138201384 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
138201384
NCBI-ProteinID:
XP_069010930
LinkDB
All DBs
Position
Unknown
AA seq
1436 aa
AA seq
DB search
MATMRTQFGVLFLLAQWVVCSDAWFWSWTGTTTLAPTVDHEGSGSPVFSGEPPSESSATV
GAEIIDEGHGILRVLQTWDETTEAPQLTALLPTTQPESERASEKATSGILARKSKPEDTV
VSLLQLIGDPPPSDITLVFESDTPGYRFGPSANTGQLARAHFPSPFHRDFSLIFNLKPTS
DGGGVIFSITDASQKIMYVGVKLSAVQGANQNVILYYTEPDSQRSYEAARFLVPSMRDVW
TRFAIAVRDDKVMFYLNCDSDPQVMPMERSPDEMDLEDGAGVFVGQAGGADPEKFLGVIG
ELRVVGDPRAAGRHCEEDEDDSDMASGDGSGVEERRPPKPDAGKFRWTTTPQSSRPIQQP
PLTRKEEVAVSRETGLAGAKGEQGDRGEKGDRGPIGPKGESGPGTSSRGGARGEKGEAGE
TGPKGSAGFGYQGKKGEPGLAGPPGPPGPPGPTTQLAGGGDGSVVSRVPASQGPVGPQGG
PGPRGQPGADGEPGDPGEDGKTGPDGPPGFPGTPGDSGPKGDKGDRGEGQPGPRGPPGPA
GPPGQGFRSTFVDMEGSGFPDVESIRGLPGPPGVPGPPGPPGPSTAGAASSSGAFGPPGK
DGAPGQPGLPGLPGTDGLPGALGARGEKGDSGELGLPGAIGQKGARGDPGLPGTAGEAGL
AGLPGPMGPIGQPGPPGPPGPSYRVGFDDMEGSGGGFTNGLPGVRGPEGIQGPPGLPGLP
GTPGFPGTPGQKGNDGLTGTDGQPGLDGFPGPPGSKGDRGDQGERGEPGQDGTGFQGPPG
PPGPPGQIVYQTSDNFDAVGRVGAQGGPGLPGQAGFPGPIGPKGDNGDPGPPGYGVKGEK
GEPGLVIGPDGNLVHLEGLTGQKGERGPSGPVGPSGQYGPAGIKGEIGMPGRPGRPGVNG
YKGEKGESAGGAGYGYPGVPGQPGPPGPPGPPGPPIPLDRFNRYDETSRNYPAIKGEKGE
HGDRGLPGIPGTASNLDIYALKNEMKGERGDLGVKGEKGEPGGGFYDPRFGGVQGPSGPP
GNPGLPGPKGDSIRGPPGPQGPPGTPGIGYDGRSGPPGPPGPPGPPGSSSLPGAYRPNHS
VSLPGPPGPPGQPGTPGHSSGVTVLRSYDTMIATARRQVEGSLIYIIDKADLYLRVRDGL
RQVMLGEYSPFFRDLENEVAEVQPPPVILYPQSQDQSHNNGAGHYSQGGSAVRPIEPPPQ
PPIDPRYPLKYEPRFPDQRHTGQTDGRLATHHTDSRHPVTPQRRPNPPVPEPAGRVDTSG
SGLHLIALNAPQSGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRRSDRD
SSPIVNLKDQVLFRSWESIFGDNSKMRENVPIYSFDGRDILRDSAWPEKMVWHGSSNKGH
RQTDHYCETWRAGDHAVTGLASSLQSGHVLQQSSSSCSGSYVVLCIENALTTPSKK
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atggctacgatgaggacccagtttggagttttgtttctgctggcccagtgggtggtctgc
tctgatgcctggttctggtcctggaccggtactacaactttggcccccacagtggaccac
gaggggtccggcagtccagtgttcagtggagaaccgccttcagagagcagcgcaacggtt
ggagcggagatcattgacgaaggacatggcatcctgagggttttgcagacttgggacgag
actaccgaggctcctcagctgaccgctcttttaccgacaacacaaccagagagcgaacgt
gcgtcagaaaaggccacttctgggattttggcacgcaaaagtaaacctgaagacactgta
gtctccctgctgcagcttatcggggatcctcctcccagcgacatcaccctggtcttcgaa
tcggacacccccggctaccgcttcggcccgagcgccaacacgggccagctggcacgcgcc
cacttcccgagccctttccaccgagacttttccctcatcttcaacctgaaacccacctcc
gacgggggcggggtcatcttctccatcacggacgcctcgcagaagatcatgtacgtgggc
gtcaaactgtccgccgtgcagggcgccaaccagaacgtcatcttgtactacacggagccc
gactcgcagcgctcctacgaggcggccaggttcctggtgccctccatgagggacgtctgg
acccgtttcgctatcgccgtgagggacgacaaggtgatgttctacctcaactgcgactca
gaccctcaggtgatgcccatggagaggtccccggatgagatggatctggaagacggcgcc
ggggtgtttgtcgggcaagctggaggcgccgatccggagaagttcctgggtgtgatcggg
gagctgagggtggtgggagacccccgggccgccgggaggcactgcgaggaggacgaggac
gattcggatatggcttcaggggacggaagcggcgttgaggaaagaagacccccgaaacca
gacgcggggaaattcagatggacgactacccctcaatcatctcggcccattcagcagccg
ccgctgacgaggaaggaggaggtggccgtttccagagagacagggctagccggggctaaa
ggagagcagggcgacagaggagagaaaggagatcggggtccaattgggccgaagggagag
tcgggccctggcaccagctcacggggaggagcaaggggagagaagggagaagccggggaa
acgggaccgaagggcagtgccggctttggctaccaagggaaaaagggagagcctggcctc
gctggaccccccggccctcccggccctccggggcccaccacacagttagcaggtggtggt
gatggctcagttgtgtcgagagtccccgcatctcagggacccgttgggccacagggtggc
ccaggcccccgggggcaaccgggagccgatggagagccaggtgatcctggtgaagatgga
aaaactggtcctgatggacctccaggtttccccggaacaccaggtgactctggacccaaa
ggagataagggagaccgtggtgagggtcaacccggcccccggggaccgccggggcctgcg
ggaccaccaggacaaggattcagatccacctttgtggacatggagggctcaggattccct
gatgtggaatctattcggggacttcctggcccaccaggtgtgcccggtccccctggtcct
cccggtccctcaacagctggcgcagcatcgagttccggagcattcggaccaccaggaaag
gacggggcacctggtcaacccggcttgcctggtttaccgggtaccgatggccttccagga
gctctgggtgcgaggggagaaaagggtgattcaggcgagttgggtcttccaggagcaatt
ggacaaaagggagcccgaggagaccctgggttaccaggaactgcaggagaggctggtctg
gctggtctgcctggacccatgggaccaattgggcaacctggtcctcctggtcctccggga
ccgagctaccgtgttggattcgatgacatggagggctcaggtggaggtttcactaatgga
cttcctggcgtcagaggaccagaaggaatacagggtcctcccggcttgcctggacttccg
ggtacaccggggttccctggaactccaggtcaaaagggaaatgatggtcttacaggaaca
gatgggcaaccaggcttggacggcttccccggacctccgggttcaaagggtgacagaggt
gaccaaggagagaggggtgaaccaggtcaagacggaaccggcttccaaggtccaccaggt
ccacccggaccgccaggacagatcgtctaccagacatccgacaactttgatgctgttggc
agagttggggcacagggtggccccggtttacctggtcaagctggattccctggtcctatt
ggaccaaaaggtgacaatggagaccccggtcctccaggctatggagtcaagggcgagaaa
ggtgagccaggcttagtaatcggaccagatggaaatcttgtgcatctggaagggctcact
ggtcagaagggagaaagaggaccctcaggacctgttggaccctctggtcagtacgggccg
gctggaataaagggtgaaattggaatgcctggaagacctggtcgccctggtgtaaatgga
tacaagggtgagaaaggagagtcagcgggtggtgcgggctatggctaccctggagtccct
ggccaaccaggaccacctggaccacctggacccccggggcctcccattcctttagatcgc
ttcaatcgctatgacgaaacttcaaggaattacccagcaattaaaggtgaaaaaggagaa
catggagaccgtgggcttccaggcatcccaggaacagcctctaatttggatatttacgca
ctcaagaatgaaatgaagggggagcgcggagacttgggtgtcaagggagaaaaaggagag
cctggtggtggattttatgacccacgttttggaggagtacaaggcccctcagggccgcct
ggcaacccaggcctaccaggaccaaagggagattctataaggggccctcctggaccccag
ggacctccagggacaccagggattggttacgatgggcgttcaggtcctccgggaccacct
ggacctccaggaccaccggggtcatcctcacttccaggagcatacaggcctaatcactcc
gtcagtctccctggacctcccggtcccccaggccagcctggaactcctggtcactcctct
ggggttacagttttgaggtcatatgacacaatgattgctactgccagacggcaggtagag
ggcagcctcatctacatcatagacaaagcagacctctatctgagagtacgcgatggactg
cggcaagtcatgcttggagagtacagtcccttcttcagagatctggagaatgaggtagca
gaagtccaacctccacctgtgattctgtacccccagtcccaagaccagtcccacaacaac
ggagcgggccattactcccagggtggttctgccgtgcgacccattgagcctccaccgcag
ccacctatagatcccagataccctctaaagtatgagcccagattcccagaccagagacac
acgggtcagaccgatgggagattagccacccaccacactgacagcagacaccctgtcact
ccccagcgacgacccaacccacctgtgcccgagcctgctggccgtgtcgacacatcagga
tcaggactacacctcatcgccttgaacgcccctcaatctggcaacatgcgaggcattcgc
ggggcagacttcctgtgcttccagcaggctcgtgctgtgggtctgaagggaaccttcaga
gccttcctgtcctccaagcttcaagacctctacaccatcgtccgcaggtcggaccgggac
agctcccccatcgtgaacctgaaggaccaagtgttgtttcgtagttgggagtctatcttt
ggtgacaacagcaaaatgagggagaatgtacccatctactccttcgatggcagagacatc
ctcagggatagcgcatggcctgagaaaatggtctggcatggatcaagcaacaaaggccac
cggcaaacagaccactactgcgaaacatggcgggcaggtgaccacgctgtgactggtctg
gcatcatcactacagagcggccacgtcctgcagcaaagctccagcagctgctccggctcc
tacgtcgtcctctgcatcgagaacgccctcacaacaccctccaaaaaataa
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