Embiotoca jacksoni (black perch): 138201427
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Entry
138201427 CDS
T10523
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03015
mRNA surveillance pathway
eja04530
Tight junction
Brite
Transcription machinery [BR:
eja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138201427 (sympk)
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
138201427 (sympk)
U7-dependent histone pre-mRNA processing factors
138201427 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Cnd1
INTS1_R4
Cohesin_HEAT
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
138201427
NCBI-ProteinID:
XP_069011018
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MDVSPQEEEPQVPGVVDMTTSEKVVELLNQAALIPTDEKLAVLKQVQELIINKDPSLLDN
FLDEIIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLLKDESVNVVKKAILT
LTQLYRVTLQWLVRPKAVSEMQEACWDLVTQMKEEVLALLDSENDGVRTHAIKFTESLII
TLSPRTSDSDVPKRQEGDISLDKVPKDHSYIRYDVLCEEGKTALEKLLKFMVHPAISSIN
LTTALGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHP
CSLEFQGQISTLLLDLGMPQSEITRSTPAPREQRKRPRHEQYTEGKKVKMEPTLIEDDED
KEEPAPLSVPKPAAVPVAQSAIDLTAEFLHPLLTSENVANLVLISMVYLPDVMPASFQAT
YTPVESAGTDAQIKHLARLMATQMTGAGIGPGLEQCKAREDDMGKEEDNEDDAGGKDLLI
KRKVPAVMMGQAISVVGGYAEKPSTTEAPTAVKRLPEPILPSAQTKMTGASGRKKVFRLS
DVVQPLSETQIEKLTSKAVNRILHSEKAIAQSGMSHVRVKILSRLVTQFEGMMKEDVLQF
ILDDIRTRSDLAFSLLYQEYNTYLSQMPSGLLDSYDHCLFTLLSGLQEKPEQRDGLFTKL
VLEAPIITESALEVIRRYCEDESRVYLGMTTLKELIVKRPCRQFQYLHVLLDLSSHDKEK
VRTTALAFLKRMYEKDQLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVAAPWTEETV
RQCLFLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVEN
CPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQAL
PKLIKLNPIVVKEVFNRLLGTQNSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKATN
LCFAEKNVYTSEVLAVVMQQLLEQIPLPMLLMRTVIQSLTMYPRLGGFVMNILYCLIFKQ
VWKYPKVWEGFVKCCQRTKPQSYTVLLQLPPAQLTSVFERCPEMREPLLQHVLSFTPDQQ
AHVPASIMAVLKANKKPEPKPVEPVGENEEADKDAVRTFVSQMEPAPIVEEAPAMADNET
ETETETPVKEEPAAVKEEEKESRINEEQEEEQEEQEEQEEEEEEEPMEQEESDPVIQEET
DNSISQVELTREADTPSPEPEAAEEPMEESQPEPSNQQEPEKEAEAEADVTEPEAGSSSE
DVE
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggatgtttctccccaggaggaggaacctcaggtccccggtgtggtcgacatgaccacc
agtgaaaaggttgtggagctcctgaatcaggccgccctgatacccacagatgaaaagcta
gctgtgctcaaacaggtccaggagcttataatcaacaaggatccatctcttcttgacaat
tttttggatgagataatcgcctttcagactgacaagtctattgaagtgagaaagtttgtc
attggcttcattgaggaagcatgtaaacgggacaatgagctcctcctcagactgatcgcc
aacctgaacatgttgctgaaggatgaaagtgtgaacgtggtgaagaaagccatcctcact
ctcacccagctctacagagttactctacagtggttggtgcgccccaaagcggtatcagag
atgcaggaggcatgctgggatttggtcacacaaatgaaagaggaggttttggccctgctg
gactctgagaacgacggtgttcgtactcacgccatcaagttcacagaatcactgatcatc
actctgtcaccacggacgtccgactccgacgtccccaaacgacaggaaggcgacatcagc
ctggacaaagttcctaaagatcactcgtacattcgctacgatgttttgtgtgaggaggga
aagactgcactggagaaactgctgaagttcatggtccacccggcgatttccagcatcaac
ctcaccacagcgctgggttctctggccactattgcccgtcagaggccgatgttcatgtca
gaggtggtgcaggcttatgagacactgcatgcaaatctaccccccactctggccaagtct
caggtcagcagcgtgagaaagaacctgaagctgcacctggtggcggtgctgaagcatccg
tgcagcctggagtttcagggtcagatcagcactctgctgctggacctcgggatgcctcag
agcgagataactcgctcaacaccggcaccgcgagagcagcgcaaaaggcctcgccatgaa
caatacacggagggcaagaaggtcaagatggagccaaccttgatcgaagacgatgaggac
aaagaggagccggctcctctttcggtcccgaagccggctgccgttcccgtcgcacagtct
gccattgacctcacagcggagttcctgcacccgctgctcacctccgagaacgttgccaac
ctggtgctcatcagcatggtgtatctgcccgacgtcatgccagcatccttccaggccacg
tacacacctgttgagtcagcaggcaccgatgcccagatcaaacatctggccaggctgatg
gccacgcagatgactggagcagggatcggtccaggactcgagcagtgcaaggccagagag
gacgacatgggcaaagaggaagacaacgaggacgacgccggaggcaaagaccttctcatc
aagcgtaaagttcccgcggtgatgatgggccaggccatctctgtggtgggaggttacgca
gagaagccttcgaccacagaagctcccaccgcggtcaagaggcttcccgagcccatcctt
ccttctgcacaaaccaagatgacgggggccagcgggaggaaaaaagtgttccggttgtca
gatgttgtccagccgctgtcagagacccagattgagaagttaacttccaaagcagtgaac
cgcattctgcactcagagaaggcgatcgctcagagtggaatgtcccacgtcagagtgaag
atcctctccaggctcgtgacgcagttcgaagggatgatgaaggaggacgtgctgcagttt
atcctggacgacatcaggacgaggagcgacctggcgttttctctgctctaccaggagtac
aacacctacctcagccagatgccgtcagggctgctggacagctacgaccactgtctgttc
actctgctgtcgggcctgcaggagaaacccgagcagagggacggacttttcaccaaactg
gtcctggaggctcccatcataacagagtcagcgctggaggtcatacgccgatactgtgag
gacgagtcgcgggtgtatctgggcatgacgactctgaaggagctcatcgtcaaacggccc
tgcaggcagtttcagtacctgcacgtccttctggatctcagctcccacgacaaagagaag
gtgcgcaccaccgccttggcttttctcaagcgcatgtatgagaaagaccagctcagggac
tacatcgagaagttcgccctgaactacatgcagctcctggttcaccccaaccctccgtct
ctgctcttcggggccgacaaagacacagaggtggccgccccctggactgaagagacagtg
agacagtgtctcttcctctacctgtctctgctccctctgaaccaccggctggtccacgaa
ctcgcttccgtctacaccgaggccatcgctgatatcaaacgcagcgtgctccgagcgata
gagcagccgatccgtggcatggggatgaactctcctgagctgctgctcctggttgagaac
tgtcccaaaggagccgagactctggtgactcgctgcctgcacattctgactgataaagtg
cctccatctccagagctggtggagagagtgcgagacctttaccacaaacgagtgcctgac
gttcgtttcctgatccccgtcatcaacggtctcgaaaagaatgaagtcatccaggctctt
cccaagctcatcaaactcaaccccatcgtagtgaaggaggtgttcaacagactgctggga
actcagaacagtgagggaagttcgtccgtgtcgcctctcaccccaggagacctgctcatc
gccttgcacaacatcgactcaaccaaatgtgacatgaaatccatcataaaagccaccaac
ctgtgcttcgcggagaagaacgtatacacgtcggaggtcctggcggtggtgatgcagcag
ctgctggagcagatccctctccccatgctgctcatgcgtaccgtcatccagtccctcacc
atgtatccccgactgggaggattcgtcatgaacatcctgtattgcctcatctttaagcag
gtgtggaagtatcctaaagtgtgggagggatttgtgaagtgctgccagcggacgaagcct
cagtcgtacaccgtgctgctgcagctgccgcccgcgcagctgacgagcgtgttcgaacgc
tgcccggagatgcgagagcctcttctgcagcacgtcctctccttcacacccgaccagcaa
gctcacgttcccgcctccatcatggctgtcctgaaagccaataaaaagccggagccgaag
cccgtagagccggtaggggagaacgaggaggcagataaagatgctgtgcgcacatttgtt
agccaaatggaacctgctccgatcgtagaagaagctcccgccatggcagacaacgagaca
gagacagagacagagacaccagtcaaggaagaaccagccgctgtgaaagaagaagaaaaa
gaatcaagaatcaatgaagaacaagaagaagaacaagaagaacaagaagaacaagaagag
gaagaagaagaagaaccaatggagcaagaggagtctgatccagtgatacaggaagagacg
gacaatagtatttcacaggtggagttgacaagagaagccgacacgccgtcacctgagcca
gaagcagctgaggaaccgatggaggagtctcagcctgaaccgtcgaaccagcaggagcca
gaaaaagaagctgaagctgaagctgacgtcacggaacccgaagctggaagcagcagcgag
gatgtagaataa
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