Embiotoca jacksoni (black perch): 138202781
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Entry
138202781 CDS
T10523
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03013
Nucleocytoplasmic transport
eja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138202781
03015 mRNA surveillance pathway
138202781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eja03019
]
138202781
Enzymes [BR:
eja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138202781
5.6.2.5 RNA 5'-3' helicase
138202781
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138202781
mRNA cycle factors
Common to processing body (P body) and stress granule
138202781
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
138202781
NCBI-ProteinID:
XP_069013141
LinkDB
All DBs
Position
Unknown
AA seq
1112 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFDFTDFTLPSQTQTQTQGQTQSQIDSQV
NGPEGVLQNGDEPVIKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGMGH
VIKVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRVKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGHSPMSSM
NIPIPFNLVMPPIPPPGYLGQLNGPTAGRGGGMKGRSGSGGGGGTRGGRQRNRGNMGNGA
DRGQHGGHMTGSQASQDQGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgaggcgtacgggccgagctcgcagactctgacgttcctggacacggaggaa
gccgagctgctgggagcggacacccagggctccgagttcgacttcaccgacttcaccctg
cccagccagacccagacccagacccaaggccaaacccagagccagatcgacagccaggtt
aatggtcctgaaggtgtgctgcagaatggagacgagcctgtgataaaagccagtcagctg
ctggcagagctgaactttgaggaggatgaggaggatacctactataccaaggaccttccc
gtgcacgcctgcagttattgtgggattcacgatccagcctgtgtggtctactgcaacacc
agcaagaagtggttctgtaatggccgtggaaacacatccggcagccacattgtgaaccac
ctggtgagggcaaagtccaaggaggtgaccctgcataaagacggccctctgggggaaaca
gttttggagtgctataactgtggctgtcgcaacgtcttcttgctgggcttcatccccgcc
aaggctgactctgttgtggtgttactctgcaggcagccatgtgccagccagagcagcctg
aaggacatcaactgggacagctcacagtggcagccactcatccaggaccgctgcttcctt
tcttggctcgtcaaaatcccctcggagcaggagcagctccgggcacgccagatcaccgcc
cagcagatcaacaagcttgaggagctctggaaggaaaatcccactgcaaccctggaggac
ctggagaagcctggagtcgatgaggagcctcaacacgtcctgcttcgctatgaggatgcc
taccagtaccagaacatctttggtcctcttgtgaagctggaggctgactatgacaagaaa
ctcaaagagtcacagacacaagacaacatcacagtcagatgggacttgggcctgaataag
aagaggattgcttatttcacccttcccaagacagactctgatatgcgcctgatgcagggg
gatgaaatttgcctgagatacaaaggagacctggcccctccatggaaaggcatgggacat
gtgatcaaagtccctgataactatggtgatgaaattgccatagagctaaggagcagtgcc
ggggctccagtggagatccctcacaattttcaggtggactttgtctggaagtccacttcc
tttgacagaatgcaaagtgccctgaagacatttgctgtggatgagacgtcagtgtctggt
tacatctaccacaaactgttgggacatgaggtggaggatgtggtcatcaagtgtcagctg
cccaaacgcttcaccgctcaaggcctgccagacctcaaccactcccaggtgtatgctgtg
aagacagtgctgcaacgccctctcagtctgatccaaggtcctcctggcacagggaaaaca
gttacctctgccactattgtgtaccacctggcaagacagggcaacgggccagtgctggtt
tgtgctcccagtaacatcgctgtcgaccagctgactgagaagatccaccagacagggctc
aaggtggtgagactgtgtgcaaagagcagggaggctatagactcacccgtgtccttcctg
gctctgcacaaccagacccgcaacatggacagtatgccagagctacagaagctccagcag
ctgaaggatgagactggagagctgtcgtcctcagacgagaagcgctacagagctctgaga
cgcaccgctgagagggagctgctcatgaatgctgatgtaatctgctgtacctgcgtgggg
gcaggagatcctcgtctggccaagatgcagttccgatcaatcctgattgatgagagcacc
caggccaccgagccggagtgcatggtgcctgttgtcctgggagccaagcagttgattctg
gtgggtgatcactgccagctgggacctgtggtaatgtgtaagaaggcagctaaagcaggt
ctgtcccagtctctgtttgagcgtcttgtagttttggggatccggccgatccgcctgcag
gtccagtaccgcatgcacccggccctcagcgccttcccctccaacatcttctacgagggc
tctctgcagaacggagtcactgccggtgaccgggtgaaaaaaggctttgatttccagtgg
ccgcagcccgacaagccgatgttcttttatgtcacccaaggccaagaggaaatcgccagc
tctggaacatcctatctcaacaggactgaggcagcaaatgtggagaaaataaccacaagg
ctgctgaaggctggagcgaagcccgatcagatcggcatcatcaccccttacgagggacag
aggtcctacctggtccagtacatgcagttcagcggctctctccataccaagctctaccag
gaggtggaaatagccagtgtcgatgcttttcaaggccgagagaaagacttcatcatcctg
tcttgtgtgagggccaatgagcaccagggcatcggcttcctcaacgatcccagacgtcta
aacgtggcgctcaccagggcccggtacggcgtgatcattgtgggaaaccccaaggcccta
tccaagcagcctctgtggaaccacctgctgaattactacaaggaacagaaggtcctggtc
gagggccctctgaacaacctgagggagagcctcatgcaattcagcaagccccgcaagctg
gtcaataccatcaaccctggcggtcgattcatgagcacagccatgtatgacgccagagag
gccctcattcctggatctgtttatgatcgcagcagcaacgggcgtacgtccaacatgtat
ttccagacccatgaccagatcggtatgatcggcacaggccacagtcccatgtcctccatg
aacatccccatccccttcaacctcgtgatgccccccatacctccaccggggtacttggga
cagctgaacggtcccactgcaggtcgtggtggaggaatgaagggcaggtcaggcagtgga
ggaggtggtgggacccgcggtggtcgtcaaagaaaccgcggcaacatgggaaacggagcg
gaccgcgggcagcatggagggcacatgaccggcagccaggcaagccaggaccagggctcc
cagccgttctcccaggggccactgacacagggctacatcaacatgagccagccatcacag
atgagccagcccgggctctcccagcctgaactctcccaggacagttacctaggagatgag
ttcaagtcccagattgatgtggctctgtcccaggactccacctaccagggggagcgggcc
taccaacatggtggtgtgactggactgtcccagtactag
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integrated database retrieval system
