Embiotoca jacksoni (black perch): 138202912
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Entry
138202912 CDS
T10523
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
eja Embiotoca jacksoni (black perch)
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
eja03000
]
138202912 (rc3h1b)
04121 Ubiquitin system [BR:
eja04121
]
138202912 (rc3h1b)
Transcription factors [BR:
eja03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
138202912 (rc3h1b)
Ubiquitin system [BR:
eja04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
138202912 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
138202912
NCBI-ProteinID:
XP_069013379
LinkDB
All DBs
Position
Unknown
AA seq
1134 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDTQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPSPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLLADEGLPLDVAVTRKPS
PLTNGSGGPSLPQLIARGTDTVSYELLRKPGKMDGGTPSGPGSPPDILDPVPKSGMPLPP
HAMAHPRMPADHLSGVKHMPVVARGSPVYPQPQLPEMCYDTRPPHSASQYEPPQYTAGYP
YQQPPQYVPRDYIRNPPPPSESGPPYQDPYPGYGPPERPYQAPHSGPPFSYPHPPHYDRG
RHGTYTGPPPPPQPYPSQRDGLVRMSPAPLDVPPPSAGQASSLYHQEPSARDRYAPDGYY
QPGAQPPPMRTYVRGPSYGGPQPSLDYLHRRRQELLTQLEERKVISPPPFAASPTLSHPF
PSDYPPEYGDESSKTIGKCREPDYAGQYSPWSCETIGSYIGTKDAKPKDVMVPGTMEMMN
VEAKSLREPSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTAGPVQALAS
APQNPNSKHMAMPAEYTYGSHGGWGGASYPSHQTASSSQGHFSERLPMADREQLKIELQQ
VNQQITQQTQMHSMEAASNSLLLQREASAMAGQPVQPSQGQAAVAPQQQQPKWPAGGASA
TAVSSEQLSLELHQVEREIGKRTREMAMENQVAHDVQQYKMKPAENGQPDHKTQLEEISL
ALGEVSNGSSGLQESAVGGSMLSLTNKTSALSLCSDPGAAGSEMQKNGVVHSCS
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacagagttcctgctgtgcccaatctgcacacagaca
tttgaggagactgttcgccggcccattagtttgggctgtggacacactgtctgcaagatg
tgcctgaacaagttgcaccgaaaggcctgtccctttgaccagacggccatcagcacagac
atcgagcagctacctgtcaacacggcccttttgcagctggtgggaggccaggttcctaag
gctcagccagttgccttgattaccagtccagaggacacacagcattatgaggaggccagg
cagtgtgtggaggagctggccctctacctcaaacccctcagcaacacgcgaggtgtgggc
cttagcagcacggcccagagcatgctgagtcgacccatgcagaggaaactggtaactctg
gtccactgccagctggtggaggaagagggccgtgttcgagccatgagagctgcccgctct
ctgggagagcgaaccgtcaccgaactcatcttgcagcaccagaatccacagcagctctcc
tccaatctgtgggccgctgtccgtgcgcgtggatgtcagtttcttggcccggcaatgcag
gaggaagctctaaagttggtcctccttgccctagaggatggttctgctctgtccaggaag
gtgttggttctctttgtagtccagaggcttgagccacgcttccctcaggcctctaaaaca
agcataggccatgtggtgcagctcctctacagggcctcatgcttcaaggtcaccaaacgg
gatgaagattcctccctgatgcagctgaaagaggagttccgtacttacgaggctctgcga
cgtgagcacgactctcagattgttcagatcgccatggaaggtggattgcgcattgctcct
gaccagtggtcctctctgttgtatggagatcagtctcacaagtcacacatgcagtctatc
atagacaagctgcagaccccagcatcttttgctcagagtgttcaggagctgacgattgca
ctgcaaaggactggagatccagccaacctcaacaggctgcggccccacctggagctactg
gccaacatcgaccccagtcctgatgctccttctcctacatgggagcagcttgagaagggg
ttggtagcagtgaaaactgtggtacatggcctggtggacttcatccagaaccacagcaag
aaaggagctgatcctcaacagcctcctcagcacagcaagtacaagacatacatgtgtcgc
gacatgaagcagaagggaggctgtcctcgtggagccagttgcacctttgcccactctcag
gaagaactggagaagtatcgcaaaatgaataagcgcctggcagctcgccttcctggctca
ggagggctcttggcagacgagggccttcctcttgatgtagcagtgacccggaagccttca
cccctcaccaatgggagcggcggaccctctttgccccagctcattgcccgtggcacagac
acagtctcatatgaactgttgcgtaaacctggcaagatggatggagggactcccagtggc
ccaggatcaccacctgatatcctggaccctgtgcccaaatccggaatgcctctgccacct
catgccatggcccacccaaggatgccagcagaccacctctctggggtgaagcacatgcct
gtggtagccagagggtcaccagtgtacccacagccgcaactccctgagatgtgctacgac
actcgccctccacattctgcctctcagtatgagcccccacaatacaccgcagggtacccc
taccaacagccaccacagtatgttcctcgggattacatccgtaatcctcctcctcccagt
gagtcaggacctccttaccaggacccttaccctggctacggccctccagagcgcccatat
caggcccctcactctggcccacccttctcctatcctcaccccccacactatgacagaggt
cgccatgggacctacactggcccgccacctcccccgcagccttacccatctcagagggat
ggcctggtcagaatgagtccagcacctctggatgttcccccaccatcagcaggacaggcc
agctcactctaccaccaggagcccagcgcccgggatagatacgcaccagatggctactat
caaccaggcgcccaacctccacctatgaggacttatgtcagggggccatcatatggtggt
ccacagcccagcctggactacctgcaccgacgtcggcaggagctgttaacccagctggag
gaaaggaaggtcatctcccctccgccgttcgctgcctcccctactctttcgcatcccttc
cccagtgactaccctcctgagtatggtgacgagagctccaaaactatcggaaaatgcaga
gagcctgactatgcagggcaatactctccctggtcctgtgaaactattggctcgtacatt
ggaacaaaggacgccaaacccaaagatgttatggttcctggtaccatggagatgatgaat
gtggaggctaaaagtctgagggaaccatctttggaggctccccggaggggtgcagaagta
aaggacgatgaccctattatcccgttcggcccccagcccactgtatcacgctttggtgcc
atctcccgcacctcaaagaccggctaccagaccgctggccctgtgcaggctttggcctcc
gctccccagaacccaaactctaaacacatggccatgccagcagagtacacgtatggaagc
catggaggatggggtggagcttcatacccctcccaccagactgcctcctcctctcaggga
cacttcagtgagcgcctaccgatggcagacagagaacagttgaagattgagctgcagcag
gtcaaccagcagatcacccagcagacccagatgcacagcatggaggctgccagtaactct
ctactcctgcagagggaggccagtgcaatggcaggtcagcctgtgcagcccagccagggc
caggcagcggtagccccgcagcagcaacagcccaaatggccagcagggggagctagtgcc
accgctgtctccagcgaacagctaagtctggagctccaccaagtggagagagagattggc
aagaggacccgtgaaatggctatggaaaaccaagtagcccatgatgttcagcagtacaag
atgaagccagcagagaatggacagccagaccacaagacgcagctggaagaaatctccctg
gctcttggcgaggtgtcaaacggctccagcggtctgcaagaaagtgcagtgggcgggtcc
atgctgtcactgacaaataagacgtctgcgttgagcctgtgttctgatcccggtgccgct
ggatcagagatgcagaagaatggcgttgtccattcctgctcttag
DBGET
integrated database retrieval system
