Embiotoca jacksoni (black perch): 138203239
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Entry
138203239 CDS
T10523
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja04382
Cornified envelope formation
eja04510
Focal adhesion
eja04512
ECM-receptor interaction
eja04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138203239
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138203239
09142 Cell motility
04820 Cytoskeleton in muscle cells
138203239
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138203239
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
eja04147
]
138203239
00536 Glycosaminoglycan binding proteins [BR:
eja00536
]
138203239
Exosome [BR:
eja04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138203239
Glycosaminoglycan binding proteins [BR:
eja00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138203239
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
138203239
NCBI-ProteinID:
XP_069014091
LinkDB
All DBs
Position
Unknown
AA seq
1625 aa
AA seq
DB search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NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgggaaggcaagtgtttgtagtcccactgatcctgtttgctgtgatgctgatggtgacc
gagggaaaaaagtgtgtgtgcaatggaaaatcaaggtgccactgtgcaggggtgaaaggc
aacaggggacacaaaggatttctaggagatccaggtctgccagggtcacagggccttcca
ggatcaaatggtcaccctgggccaacgggaccaaagggcaacactgggcattatggacca
atgggaccaaatggcgatccgggacctgaaggcaaagagggatttgcagggtctcatggc
ttaccaggtgctccaggccttcagggggctccaggtgccccaggggccccaggctgcaat
ggaacagatggagaagatggacttcctggctatcttggggccaatggtattgatggactc
ccaggtccaccaggtcagcctggactgaagggagatccaggtttccctggagacagtgga
ccactgggggaccctggactaccgggatctgctggacaagaaggcataaatagtgtcgca
ggaccacgtggacgaaagggggtacaaggcccatcaggcctaccaggaccaccaggtcgc
attagggagtatttttcagaaggttacgccttaaagggtctaaaaggagacaaaggaaac
gtaggatataaaggctgcaagggtgaaccaggagaccctggttatggcgattttgtagaa
ggagcaaagggtgacaaaggacacccgggtcaagcaggaaagccagggaaggatggggat
cctggacaatcaggatttaggggaagacctggactaaaaggtgaaccgggatatccaggg
acaccaggaaggctgggtgaaaagggaaataggggtccccctggaccgcctggagatata
tatgggcctgtgattggcccctttaaaggatacatgggagatcctggacctccgggcaca
cctgggctccctggtcctcaaggtcctgtgggagatcctggacctgttggacttccaggt
tatggatctgggactgggtcttatgtgccaggcccacgtggtcccactggatttccaggc
cctaaaggggacagtggtgaccctggggatatttatagaggactaccgggtctagatggg
gatcatggtgatcaggggcccactggggatcagggccctcctggaccccctgaagacaga
aatgtcaatattaccaagggtctcccaggaatgaagggagtgaagggtctgcctggacct
atgggatatgatgggatatttggaaagaaaggagaaaagggggagccttgttatgagtgt
agttcacctggacttccaggaccaccgggtccccacggaccacctggccctcctggtaat
aatcaaggaccaggcgaaaaaggtgatccaggctacccaggacctagaggctcacctgga
ggacccggtcccattggtgaaactggatttccaggccctacaggacaaaagggagacttg
tatttagacaggagtcgtggggtaaaaggagaaaaaggagacccaggatattctggcagg
cctggtgcagatggtcaccctgggcctcctggattatcaggtcgaaaaggcaatcaagga
cctccaggggattcgtatcccagccctgatacgaagggagaccgtggtcccccaggtcca
ccggggcctttaggcagaacgggaccggttggctaccctgggccagtgggatacggacct
gctgggcttccaggaaataaaggagatgatgggattcctggctttccaggacagcctgga
attccaggccaaaaaggggaatctggtctcatcatcatcaaaggacttcctggaccacga
ggattaaagggtcggccaggctcacatggaagcccaggttatcaagggggaccaggaagc
ccaggaagaacaggttttccaggacagaaaggagaaagcggtgacatgtcaactcccgga
aggcctggaatcccaggactgaaaggtgctaaggggcagccaggtgacccaggctctcca
ggacatggctcgcctggtcggccgggtccacgaggcgttcctggtcgtacaggactgaag
ggtgatggtggtccaggataccttggccctccaggccccccaggacgtcccggggaagat
ggagctccaggtccagcaggtgatggtgggatccctggcccacctggggagcaaagacca
agaggcaatcctggatatccaggagaaaaaggaagaaaaggttctgtaggtattccagga
gagccaggcggcaaagactgtaaagttcctttacctggaccagcaggaccaccaggacca
aatggttatccaggacatacaggtcctaacggtttgcctggggagaagggaaatgcaggt
ttgcctgggttcggtcgtcctggccctcctggtgatcccggttttctggggccatcagtc
ccaggtccacaagggcttgcaggacaaaaagggaaaaggggagaaattggactgcctggt
caaccaggaccgagaggagaccctggaccagatggaataacaggatatggaccagaagga
ccacctggcattataggaccaccgggtcaaataggtgaccctggccgagatggagccagg
ggtttcccgggttccccaggaatggatggggtcccaggcttgacaggtcctcccggggtt
cgattaccaccttcgaacataactggggaacaaggagaccgtggccaaccaggtcaacct
ggtctacctggtcccaatggagatactggaagaactggaatgaaaggggagagaggacac
aatgggggatcagggcgtcccggaccaaagggtccccaaggtgatccaggttttgataga
tcaggggttataggaattccaggacctcaaggagagccaggagacccaggatttattggc
cctctggggtacaagggaataaaaggagatccaggatatcctggagggccaggttccaat
ggttctccaggttcacctggttataaaggagttactggcgagccatactatggatatgga
tcacctggacgagtaggacaaaagggggaaaaaggttcagaaagtacttttatgaagaag
ggtcagaagggagaacctggttttgcggggccagcaggtccaccaggatatcatggagac
aaaggaaacccaggatctagaggagaaaatggtccgccaggctatcaagggccaaaaggt
ttagatggccctccaggaagaaaaggaccaccaggacctaatggacggccaggtgaccgg
ggccagtcaggtgtcagtggtggtccaggtcctaaaggcgaccagggccgtgatgggttc
cccgggccacgaggggagaagggggacacaatcaatttaaaagggatgcctgggaggccc
ggtgaaccaggtcccaacggtgatcctggagaccgtggtcctcctggcctgcccgctttc
ggtggtcctggaacaataggggacacaggacgtccaggtccacctggcagatcaggtcca
aaaggacaaccaggaagagaaggggcatgtgttcctggctctaaaggagaccctggccac
cctggcaatcatgggagcagaggctatccaggcccacctggccctccgggtcccacagtg
cctgggttaaaaggagacagaggggacccaggtccttcaggaggtccaggttatagtggg
gcccaaggagatccaggccctcggggaccacctggtccaattggcagacctggaggccca
gggccaagaggtcactctggtcctcctggatttcaagggccgcctggtgacagaggagac
ccaggatacatcccaggcccgcctggtcctcctggtcctcctggtgtcccaggacatcca
ggcttgaaaggtcaaccaggatttatcaagtggattgttgaaccaggacctcctggctca
cctggtccaccaggccaccgaggaccaaaaggggacccgggtccatcgggaccatcaggc
cctccaggcccaacaggtgtcaaaggaacacctggtttcagcccacctggccagcccgga
tttactggccacaaaggagacaaaggaagcgtgggactgacaggcccagagggcagacct
ggaaaccaaggccaaaagggtcctccaggtttgcccggcagcaccgtttcagattatgtt
gatggtttcctgatcatcaagcacagtcagagcatccatgtccctgactgcccttttggg
accagccacatctactctggatactcctttgtattcatcaacggaaatgagagagctcat
ggtcaggaccttggcaccatggggagctgtctccctcgtttctccaccatgcccttcctg
ttctgtgacacagaaagtacctgccgctatgcttctcgcaatgactactcatactggttg
tccactgacacgccaatgcctgtcgacatggttgccatcacaggggaaaagctagcctct
tacattagcaggtgttcagtgtgtgaaaccacctccaatgttctagccatccacagccag
acaactcggataccagaatgtcccagtggctgggaatctctgtggactgggtactcattt
gtcatgcaaacgggtgcaggagcagaaggttcctctcagcctctggtttctcctggctca
tgtctggaaaatttccaccgagtgccctttattgagtgtcacggcagggggacgtgtaac
tactaccctgattcctatagctactggctggcctctctggacccgaacaacatgttcagt
aaaccagttcctcagacagtaaagggaccttctcttcaaaatgtcatcagccgttgtcac
gtctgcagaaaactatag
DBGET
integrated database retrieval system
