Embiotoca jacksoni (black perch): 138204817
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Entry
138204817 CDS
T10523
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
138204817 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eja03400
]
138204817 (msh2)
DNA repair and recombination proteins [BR:
eja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
138204817 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
138204817
NCBI-ProteinID:
XP_069016428
LinkDB
All DBs
Position
Unknown
AA seq
939 aa
AA seq
DB search
MAVQPKQNLSMDSAAEHGFLSFIFSMPEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKHLGSGSRRLESVILSKLNFEAFVKDLLLVRQYRVEVYRNHSKSSKEHDWRIEYKA
SPGNLTQFEEILFGGATGAEGCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQIGPKECLLAQGEGNADGNKLREVVQRGGMLVSDRKRAEFSSKDMVQDL
NRLLRAKKGETVASNTLPELDKQVAMSCLAVVVRFLELLSDESNFNSFSLTALDLGQYMR
LDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
MVESFVCDAELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCFRVYQAVSQIPALVTAL
DRYSGSYQVLLQAVFLAPLKDMQTDFTKYQEMIETTLDMNQIDHHEFLVKASFDPVLSEL
REKMDALEKSMQAVLNSAARELSLEAGKTVKLDSNGVLGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEDYTRSREEYEEAQNAIVKEIINIASGYVDPLQTLSDVIAQ
LDAVASFAAASVSAPVPFVRPRLVADGRRRVELLQARHPCMETDADTAFIPNDVTFVQGE
KSFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQVKG
VSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKIGSFCLFA
THFHELTALAAQQPSVHNLHVTALTSHNTLTMLYRVKPGVCDQSFGIHVAELACFPPSVL
AVAKEKAEELEEFQEPAGEKSEELEEEEEEPDAKRRRTDKQVGGNLIQDFLQRVKSLPAA
TMTEEEVKAELRRMKQELLAKNNTYISEILARCVPGKTA
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaaacagaacctgtccatggacagcgcagccgagcacggctttctg
agcttcatattctccatgccggagaaaccggacaccacgttccggatattcgaccgtaac
gactactacaccgttcacgggaaagacgccatattcgcggcgaaggaagttttcaagacg
aacggggtcatcaaacatcttggctcggggagtcgcaggctggagagcgtgatcctgagc
aagctgaactttgaggcctttgtgaaagacttgctgctggtgagacagtacagagtggaa
gtgtacaggaaccacagcaagagcagcaaagagcacgactggaggatcgagtacaaggcg
tctccgggaaacctgacccagtttgaggagatcctgtttgggggtgcaaccggagccgag
ggatgtgcgggagtcgtggccgtccggttcgcgacgggagccgacgggcagcgcgtggtc
ggggtcggctacgtggacgccgcccagaggacgatgggagtgtgcgagtttccggacaac
gaaatcttctccaacctggagtccctgctcgtccaaatcggccccaaagagtgtctcctg
gctcagggcgaaggcaacgccgatggcaataaactgcgggaggtggtgcagcgcggcggc
atgctggtctctgacagaaagagagcagagttcagcagtaaggacatggtccaggacctg
aacaggctgctgagagcaaagaaaggagagactgtggcgagcaacacgctgcccgagctg
gacaagcaggtggccatgtcatgtttggcagtagtggtgcgtttccttgagctgctgtcc
gacgagtccaacttcaactccttcagtctgaccgctctggacctcggtcagtacatgagg
ctggacaacgctgccgtcagggcgctgaacctcttccagggttcacccgacgacaccagc
ggagctcattcattggccggtctgttgaacaagtgcaggacgccgcagggccagcggctg
gtcaaccagtggatcaaacaaccgctcatggacaaaaccaaaatagaggagaggctggac
atggtggagagcttcgtgtgcgacgccgagctgaggcagacctgtcaggaggacttgctg
cggcggtttcccgaccttcaccgcctggccaagaagttccaccgccacaccgcgacgctg
caggactgcttccgcgtctaccaggccgtgagccagatccctgccctcgtcacagcgctg
gacagatactcgggtagctaccaggtcctgttgcaggcggtgttcctcgctcctctcaaa
gacatgcagactgacttcactaagtaccaggagatgatcgaaaccacactggacatgaac
cagattgaccaccacgagttcctggtgaaggcctcgtttgacccggtgttgagcgaactg
agagaaaagatggatgcgctggagaagagcatgcaggcggtgctgaacagtgcagccaga
gaactaagtctggaggccggtaagaccgtgaagctggactccaacggcgtgctgggtttt
tacctgagagtcacctgcaaggaggagaagagtctgaggaacaacaagaaattcaccacg
ctggacgttcagaagaacggagtgcgcttcaccaacagcaagctgagctccctgaacgag
gactacaccaggagcagggaggagtacgaggaggcccagaacgccatcgtcaaagagatc
atcaacatcgcctcgggttacgtggaccccctccagacgctgagcgacgtgatcgcgcag
ctggacgccgtggcgagcttcgccgcggcgtccgtctccgccccggtgccgttcgtccgg
cctcgcctcgtagccgacggccgcaggcgcgtggagctgctgcaggccagacatccctgc
atggagacggacgcagacaccgccttcatacccaacgacgtcaccttcgtccagggcgag
aagagcttctatattattacaggaccgaacatgggtggcaagtcgacgttcatccggcag
gtgggcgtgatcgccctgatggcccagatcggctgcttcgtgccgtgcgagaaggcggag
ctcagcgtgattgacagcgtcctggccagagtgggggcgggagacagccaggtgaaaggg
gtgtccaccttcatgtccgagatgctggagacggccgccatcctgcgctcggccacggag
aactcgctcatcatcatcgacgagctcggcaggggcacgtccacctacgacggcttcggc
ctggcctgggccatcagcgaacacatcgcctccaaaatcggcagcttctgcctcttcgcc
acccacttccacgagctgacggcgctggcggcgcagcagccctccgtccacaacctgcac
gtcacggccctgacgagccacaacacgctcacgatgctgtacagagtcaaaccaggtgtg
tgtgaccagagttttggaatccacgtcgccgagctggcttgcttcccgccgtcggtgctg
gcggtggcgaaggagaaggcggaggagctggaggagttccaggaacctgcgggggagaag
tcggaggaattggaggaggaggaggaggagcccgacgccaagagacgacggacagacaaa
caagtagggggaaacctgatccaggacttcttgcagagggtgaagtcacttcctgctgcc
accatgactgaggaggaggtgaaggcggagctcaggagaatgaagcaggagctgctcgcc
aaaaacaacacgtacatcagcgagatcctcgcgcgatgtgttcctggaaaaacagcttga
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