Embiotoca jacksoni (black perch): 138205296
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Entry
138205296 CDS
T10523
Symbol
rpa1
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03030
DNA replication
eja03420
Nucleotide excision repair
eja03430
Mismatch repair
eja03440
Homologous recombination
eja03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138205296 (rpa1)
03420 Nucleotide excision repair
138205296 (rpa1)
03430 Mismatch repair
138205296 (rpa1)
03440 Homologous recombination
138205296 (rpa1)
03460 Fanconi anemia pathway
138205296 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
eja03000
]
138205296 (rpa1)
03032 DNA replication proteins [BR:
eja03032
]
138205296 (rpa1)
03400 DNA repair and recombination proteins [BR:
eja03400
]
138205296 (rpa1)
Transcription factors [BR:
eja03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
138205296 (rpa1)
DNA replication proteins [BR:
eja03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
138205296 (rpa1)
DNA repair and recombination proteins [BR:
eja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
138205296 (rpa1)
MMR (mismatch excision repair)
138205296 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
138205296 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
138205296
NCBI-ProteinID:
XP_069017293
LinkDB
All DBs
Position
Unknown
AA seq
600 aa
AA seq
DB search
MTELSGGAIEALANGSGGNDTVLQMVNIRKIDGGSGPPRFRVMMSDGLHTLSSFMLSTQL
NCMAEENKLTPNCVCILKRHVTNILKDGRRVVIILEIDVIKTAKEVAGRIGDPTPYTEGQ
VKGPQLAPVPEHRPPLVSQNKNDVNRGFNRDFGKKAPSVMPSTPGGGSKVVPIASLNPYQ
SKWTIRARVTNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVEKFYSLIEAGKV
YYISKASLKIANKQYTSVKNDYEMTLNGESSIIPCDDSGDVPMVQCNFVSIGDLESRDAD
TIIDVIGVCKSVDEVTRITTKTNREVSKRSLNLIDMSGKLVSVTLWGEEAEKFDGSGQPI
VAIKGAKLSDFGGRSLSASFSSTMMINPDIPEAYKLRGWYDKEGYAMDGQSLTEMKGGGG
RGNDTWKALSDVKTEHLGHGDKADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQQNG
MFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAETILGQNSAYMGQLKDSNES
AFDEVFQQANFHTFVFRNRVKLETYNDESRIKATVLDVKPVDHTDYSRRLIMNIRKLGAQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgacggaactgtctgggggcgcgatagaggctctggccaacggatccggtgggaacgac
acggtgcttcagatggtgaatattcgcaagattgatggaggaagtggtcccccccgcttt
cgggtgatgatgagtgatggtctgcacactctgtcatccttcatgctctccacccagctg
aactgcatggctgaggagaacaagctgaccccaaactgcgtctgcattctgaagaggcat
gtgaccaacatactgaaggatggacgacgagtcgtaatcattttggaaattgacgtcatc
aagactgccaaagaggttgctggtagaatcggagaccctactccgtacactgagggtcag
gttaaaggaccgcagttagctccagtccctgaacaccggcctccactggtgtcacaaaat
aaaaatgatgtgaacagaggtttcaacagagattttgggaagaaggctccatctgttatg
cccagtactccagggggcggctccaaagtcgtgcccattgccagcctcaacccctaccag
tccaagtggactatccgtgctcgtgtgaccaacaagagcagcatccgaacatggagcaac
tctcggggggatggcaaactcttctccatggagatcgttgatgagagtggagagataaga
gtgactggttttaaccaagaggtggagaagttctacagcctaattgaggctggcaaggtc
tactacatctccaaggcctcgctgaagatcgccaacaagcagtacacatccgtgaagaac
gactatgagatgacactcaacggagagtccagcatcatcccctgtgatgacagtggggat
gttcccatggtgcaatgcaactttgtgtctatcggtgacttggagagcagagatgcagat
accatcattgacgtgatcggagtgtgcaagagtgtggacgaggtgacccgcatcactacc
aagaccaaccgtgaagtgtcaaagagatctctcaatctgatagacatgtctggaaagctg
gtgagcgtcacactgtggggagaggaggcagagaagttcgatggttccggacagcccatt
gttgccatcaagggcgcgaagctttcagattttggaggccgctctctctctgcatccttc
agcagcaccatgatgatcaacccagacatccctgaggcatacaagctcagaggctggtat
gacaaggagggctatgctatggatggacagtctctgacggaaatgaaaggtggcggcggg
cgaggaaacgacacctggaaggctctatctgacgtgaagaccgagcatctgggacacgga
gacaaggcagactactacacctgcatagctaccatagtgtacctgcgcaaggaaaattgc
ctttaccaggcctgcccgagccaagactgcaacaaaaaggtggtcgaccagcagaacggc
atgtttcgctgcgagaagtgcgacaaagagttccccaacttcaagtaccgcctcatcctc
tccgccaacattgcggattacggggacaaccagtgggtgacttgcttccaggagagcgct
gagaccatcctgggccaaaactcagcttacatggggcagctcaaggactcgaatgaatct
gccttcgatgaggtcttccagcaagccaactttcacacttttgtcttccgcaacagagtg
aagctggaaacgtataacgatgaatccaggattaaggccaccgtgctggatgtgaagcct
gtggaccacacggactacagcaggaggctgatcatgaacataaggaaactgggtgctcag
tag
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integrated database retrieval system
