Embiotoca jacksoni (black perch): 138205436
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Entry
138205436 CDS
T10523
Symbol
whrna
Name
(RefSeq) whirlin
KO
K21879
whirlin
Organism
eja Embiotoca jacksoni (black perch)
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
eja03037
]
138205436 (whrna)
Cilium and associated proteins [BR:
eja03037
]
Primary cilia and associated proteins
USH complex and associated proteins
138205436 (whrna)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
USH1C_N
HHD_RTEL1
DUF6288
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
138205436
NCBI-ProteinID:
XP_069017562
LinkDB
All DBs
Position
Unknown
AA seq
978 aa
AA seq
DB search
MSSTDLERMSLSSSANSVASSARTLSANVRKLHNALNLLLNDFEREQFIHCLNVYHSKRN
VYDLVQTLNVILNAPSKRQLLPMLRLVIPRSDQLLFEQYTSEGLYLKSDLVASNGNAEPP
PGDYPSASPTPPGHFSPSNPPEFQVALRGSPDSFSTSSEGTAPLVPLLGRNFIHEPPGEL
RQVTMKRHKSNEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRIGDQIMKVNDKVFDK
VTHAEAVKVLKGSKKLCLSVRSVGRIPGGYVTNHVYTWVDPQGRSVSPPPDLPEHRSATL
RRTDSQRRSNMQLLQEGDEKKVNLVLDDGRSLGLMIRGGAEYALGIYITGVDQGSAAECG
GLKVGDQILEVNGRSFLSIPHDEAVRVLKSSRHLMMTVKDVGRLPHARTVVGETKWIASS
QIGESSANSSVAGFSVDQGASAAGKSGFYKGVAGSQVTLSSLVNQSRAMLEEQARHLLTE
AERQTMGYYVEEYRDGHIGVEQLVMALFELLNTHAKFSLLSEVRGLVTPQDLERFDGLVL
RREIQALKARQGTAGAAALHPDSLSMVSYPDTLTSSSASFMTNTTLSSARERLLWLIDMM
ENDSVVESNEENPPESLNTLLTDISLDDVQSTTAESPPSFKPPPPPGVPRHPSRRDQLNK
CPSSESSHSGLYFTAPTSHNHSKEPGHKPASPSLHHKREPPGEPSQEYAAIRKREAAAMA
KKKKISSAQLSKVAQHNIGPFPRVQSPNRGTKPAAPSPSPPPPPPLPAPPPPPSLPIKPA
SMSKASSAPSPGSKQQFVTVEVHRPNAEPDVNEVRPLPQARGGALSQLSDSGQTLSEDSG
VDIAESGHVSKDSSPHSSRTRLPRDTQVGGGDNPSKPPGLLEPTSTLVRVAKSASTLGIA
IEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGQVILEVNGASMRGREHRDAARLIAEAFK
TKERDYVDFLVTEFNVAL
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaccgacctggagcgcatgtcgctcagctcctcggcaaactcggtcgcctcc
agcgcgcggacgctgtccgccaacgtgaggaagctgcacaacgcgctcaacctcctgctc
aacgacttcgagagggagcagttcatccactgcctcaatgtctaccactccaaacgcaac
gtgtacgacctggtgcagaccctcaacgttatcctcaacgcgcccagcaagcggcaactt
ctgcccatgctgcggctggtgatcccccgctctgaccaactcctgttcgagcagtacacc
tcggagggcctgtatttaaaatcggatttagttgcaagcaacggcaacgctgaacccccg
ccgggcgactacccgagcgccagcccgacgcccccggggcatttctcgcccagcaacccc
cccgagttccaggtggcgttgcgcggctcgccagacagcttcagcaccagcagcgaaggg
acagctccccttgtgcctctgctcgggaggaactttatccacgagccgccgggggagctg
cggcaggtcaccatgaagcggcacaagagcaacgagggcctgggcttcagcatccgcggc
ggctcggagcacggggtcggcatctacgtgtccctggtggagccggggagcctggcggag
aaggagggtctccggatcggtgaccagatcatgaaagttaatgacaaagtctttgacaaa
gtcacccatgctgaagcagtgaaggttctgaagggcagtaaaaagctttgtctgtcagtg
cgctcagtcggccggattccaggtggctacgtcaccaaccatgtttatacctgggtcgac
cctcagggccgaagtgtgtcccctcctcctgacctgccggagcatcggagcgccaccctg
agaagaaccgacagccagcgacgcagcaacatgcagctactgcaggaaggagacgagaag
aaggtcaacttggttttggatgacggtcggtctctgggtctgatgatccgagggggagct
gaatatgctttgggtatttacatcactggagtggaccaaggatcagcagcagagtgtgga
ggactcaaggtcggcgaccagatcctggaggtgaacggccgcagcttcctgagcatcccg
cacgatgaagccgtcagggtcctgaagtcgtcgcggcacctgatgatgacggtgaaagac
gtcggccgcctgccgcacgccaggacggtggtgggcgagaccaagtggatcgctagctca
cagattggagagagctcggccaacagcagcgtggcaggcttctctgtggaccaaggagca
tctgcagcaggaaagtctgggttttataagggcgtggcgggctcacaggtgaccctgtcc
agtctggtgaaccagtcccgggccatgctggaggagcaggcgcgccacctgctgacggag
gcagagcggcagaccatgggctactacgtggaggagtaccgggacggacacatcggcgtg
gagcagctggtcatggctctgttcgagctgctaaacacgcatgcaaagttctctctgctg
tcggaggtgcgaggtctggtcacccctcaggacctggagcgcttcgacgggttggtgctt
cgacgtgaaattcaggctctgaaagcgcgacaggggacggccggagccgccgccctgcac
cccgactccctgtccatggtgtcgtatccagacaccctgacctcgtcttcagccagcttc
atgaccaacaccaccctcagctctgcacgggagaggctgctctggctgatagatatgatg
gagaatgacagcgtggtggagagtaatgaggagaatcctccggagagtctgaacacgctg
ctgaccgacatctccctggatgatgttcagtctaccacagccgagtcccccccctccttc
aagcctcctcccccaccaggggtgccgaggcacccaagtagacgagatcagctcaacaag
tgcccctcgtccgaatcgtcccactcaggcttgtacttcacagcccccacctctcacaac
cacagcaaagaaccaggacacaaaccggcctcaccctcgttgcaccacaagcgagagccg
cccggggaaccgtctcaggagtacgccgccatcagaaagcgagaagcagccgcaatggcc
aagaaaaaaaaaatatcatcagctcagttgtccaaagtggcccagcacaacatcggccct
ttccccagggtacagtcccccaacaggggcaccaaacctgctgccccgtccccttcacct
ccacctccaccaccactcccagctcctcccccacccccatctttgcccattaaaccagca
tccatgtccaaagcgtcctccgctccctcccctggctctaaacagcagtttgttacagtg
gaggttcacaggcccaacgcagaacctgacgtcaacgaggtgcggccgctgccccaagct
cgaggtggcgccctgtctcagctgtcagacagcggtcaaaccctcagtgaggacagcggg
gtggacatagctgagtcaggacacgtcagcaaagacagtagcccccattcctcacgcaca
cgcctcccccgagacacccaggtgggcgggggggacaacccctccaaaccgccggggctg
ttggagcccacctccacactagtcagggtggcgaagagtgccagcaccttgggtattgcc
attgaaggtggagccaacactcgccagccactgccacgaattgtcacaatacagaggggt
ggttctgctcataactgtggccagctgaaggtgggtcaggtcatcctggaggtgaacggg
gcttccatgaggggtcgcgaacacagggatgccgcacgcctcatcgccgaggccttcaag
accaaagagagagactacgtggacttcctggtgactgagttcaatgtggcgctatag
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