Embiotoca jacksoni (black perch): 138207309
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Entry
138207309 CDS
T10523
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03008
Ribosome biogenesis in eukaryotes
eja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
138207309 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
138207309 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eja03019
]
138207309 (xrn1)
03009 Ribosome biogenesis [BR:
eja03009
]
138207309 (xrn1)
03016 Transfer RNA biogenesis [BR:
eja03016
]
138207309 (xrn1)
03036 Chromosome and associated proteins [BR:
eja03036
]
138207309 (xrn1)
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
138207309 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
138207309 (xrn1)
Ribosome biogenesis [BR:
eja03009
]
Eukaryotic type
Pre-60S particles
RNases
138207309 (xrn1)
Transfer RNA biogenesis [BR:
eja03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
138207309 (xrn1)
Chromosome and associated proteins [BR:
eja03036
]
Eukaryotic type
Gene silencing
piRNA pathway
138207309 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
138207309
NCBI-ProteinID:
XP_069020551
LinkDB
All DBs
Position
Unknown
AA seq
1700 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALDKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDKLWQNVNVYLSGHETPGEGEHK
IMEFIRSENTRPGHNPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSELKNHMGSDYDLERVIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYKTYISVLPRLGGYLNENGHLNLRNFEKYLEKLAEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEKEAAIKEGNKNEDSALGLAALTSSQKVTGEGKGAAADDEE
EEDDMFETEFRQYKRMYYMTKMDVDVVSDEFLAKQAKCYVEGIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISGLKLTFDFAKPFMPFQQLLAVLPAASMELLPECYRHLMTSENSP
IIEYYPLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPFNPKLTKGEAARNRHTECAV
YSYDHEKDFMFSSTLPHLFPDIIHCHVRVVNIPMDAWYVKLDHVSRRTDCSALYFCGFPT
LQHIRHKFYKKKTGVVVFQQSSRGENTILEILPSQEVETRYDDVAVQVLGKSVFVNWPHL
EEARIIAVSDGETKFCLEEPPGVQQVYDRPSTPPPTKVTCLSDKEYKDWVKDVQGITEHY
LKRKGIVVNETGVVLYGQLLTGRKYVPKANGVVELEKQWAKQVLPFAYQTVVKDIEAFYS
SLTCFKSLDELFPPSTTVFMVGNPYYSAMGEVQDSQDVIKDGRVRVVFNVPHEPQLEPLI
QNQHKYRVKYSPGYVLASRLGVTSYLVSRFSGSIFIGRGSKKNPCGEQKANVGLNLKFNK
KNEEVPGYTRRTEKEWLYSAAVEELLAEYLDRFSEVFDLVSRNSHDDVFYEDDIWPGEDQ
NGAEKVAEISSWLKGHPVSSISRTSCDLQVLDSAIVEKIEEAVDKTKVKKSTKKVRVTVK
PHLLFRPLEQQQGVVPDPEAEYRLFDRVVNIRESFTVPLGLRGTIIGIKGADREAEVLYE
VLFDEEFAGGLNIRCASPRGYRLPPCALINLSHGGRMDHSSHKLTAIVKPQPVAGANFNS
QRQLAGLNHSPRSPFVPTQHNNKHGVVKAVSQGNRSSPSTGLIQKQQGKNKEEYTNVWQS
LQNAGPPNKPPAHWHNNEGPSQQEWNQQDNKATPAGGIRLLKKNEDVGSLFSSQSSANKA
MTEFEDLIASLKISQGSQQTPPPPAPQQAPSSQSDGPLSPQSFAMKGTLVLKEMLKIDGA
GTGSPSPHEMANAAPSAGQQQSRRRSSKKLAAKMNNDTAASPSPASAASANAVLSSKVSE
LALVCVGLGMAPPDFSYIGNRQGLVVCQVKLSNGLMVHGPQCQSENDAMEKAAFFALQRL
NSVGSGFPLPPPLYPGVGPIRAPPMGAMTPVFNQQGGLLLPPQGYGPAPLWGMTLPPHHQ
NQSFFGAAGTFPGAARPPPTTTVPIGSHNQFIPLQVTKKRVSANKKNQETREFYSAAQIV
AKNQSQRAQNQPFGQSQAQSGNLDPSSSSPGLADAVSTTMADPHTPPRQSMPASGHTPGS
ASKRKHRKLAVNFEATKVSE
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgaagttctaccgctggatatcggagcgctacccgtgtctcagtgaggtg
gtgaaggagcaccagattccagaatttgacaacctctacctggacatgaatggcatcatc
caccagtgctctcacccgaatgatgaggatgtccactttcgaatctcggaggaaaagatt
ttcgctgacatcttccattacctggaggtgctcttcaggatcatcaagcctcgcaaggtc
ttcttcatggctgtggatggtgtggcgccgagggcaaagatgaaccagcagagaggacgg
agattcaggtccgccaaagaagcagaggacaagatcaaaaaagctctggataaaggagag
gtgcttcccacagaggctcgcttcgactccaactgtatcactcctggcactgatttcatg
gcgcgacttcaggaacagctcaagtattttgtccacaacaagctctccactgacaagctg
tggcagaacgtcaacgtctacctgtctggtcacgagacaccaggggagggagaacataag
atcatggagtttattcggtctgagaacaccaggccgggtcacaaccccaacacccggcac
tgcctgtacggcctggatgctgacctgattatgttgggtttgaccagccacgagccaaat
ttctcccttctcagggaggaagtgcgctttggagggaagaaatcacagaaaaggataaca
gctccagaggaaacaacttttcacttgcttcacttgtctttgatgagggagtacatagac
tacgagttctctgagctcaagaatcacatgggttctgattatgacttggagcgagtaata
gacgactggattctaatgggcttcctggtaggaaacgatttcatccctcacctccctcac
cttcacatcaatcatgatgctctgccgctactgtacaagacctacatcagtgtactaccc
agactggggggttatctgaatgagaacggccacttaaacctcagaaactttgagaaatac
cttgagaagcttgctgagtttgaccgggaacattttagcgaggtgtttgtggacttgaag
tggtttgagagtaaagttggtaacaaatatctgaacgaggcggccggactggcagcagag
aaggaagctgccatcaaagaaggcaacaagaacgaggactctgccctcggcctggcagct
ctcacctcgtcacaaaaagtgaccggagaaggaaaaggagcagcggcagacgatgaagag
gaggaggacgacatgtttgaaaccgagttcagacagtacaaacgcatgtactatatgacc
aagatggacgtggacgtggtgtctgacgagtttctagccaagcaagccaagtgttatgtg
gaaggtatccagtggattctccactactattaccacggagttcagtcctggagctggtac
tacccctaccactacgctcccttcctgtctgacatcaggaatatatcggggttaaagttg
acctttgactttgcgaaacccttcatgcccttccagcagttgttggcggtccttcctgct
gccagtatggaactgctccccgagtgctacaggcacctgatgaccagtgaaaactctccc
attattgagtactaccctcttgacttcaaaaccgacctcaatgggaagcagcaggagtgg
gaagctgtggtcctcattccgttcatagatgagaggtgcctgctagcagccatggagccg
ttcaatcccaagctgaccaaaggagaggcggccaggaatcggcacacagagtgtgcagtc
tactcatatgatcacgaaaaagacttcatgttttcctccactctgcctcatctgttccct
gacatcatccactgccatgtcagggtggtaaacatccccatggacgcctggtatgtgaag
ttagaccacgtcagccggcgcaccgactgctcagctctgtacttctgtggcttccccact
ttgcaacacatcagacacaagttttataagaagaagaccggagtggtcgtgttccagcag
agtagcagaggggagaacacgatactggagatcctccccagccaggaagtggaaacgaga
tatgatgatgtcgctgtacaagtactagggaagtctgtgtttgtcaactggcctcatctg
gaggaagctcggatcattgccgtgtcagacggagaaaccaagttctgtctcgaggagcct
cctggtgtccagcaggtgtacgacaggccgtccactcctcctcccaccaaagtcacctgc
ctgtctgacaaggagtacaaagactgggtgaaagacgtccagggcatcactgaacattac
ctgaagaggaaaggcatcgtggtgaatgaaaccggggtggttctgtacggccagctgctc
acaggaaggaagtatgtccccaaagccaacggggtggtggagctggagaaacagtgggcc
aagcaggttctccccttcgcctaccagactgtggtgaaggacatcgaggccttttactcg
tccctaacctgcttcaagagcttagacgagctcttccctccgtctaccaccgtcttcatg
gtgggcaacccgtactacagcgccatgggagaggtgcaagactctcaagacgtcatcaaa
gacggtcgggtacgcgttgtcttcaacgtgccacatgagccacagctggagcccttaatc
cagaatcaacataaataccgtgtgaagtacagtcccggatacgttctggcctctcgtctc
ggcgtcaccagttacctcgtctcccgcttctctggaagcatcttcatcggcagaggctcc
aagaagaatccctgtggggagcagaaggcgaatgtcggcctgaacctgaagttcaacaag
aagaacgaggaggttcctggatacaccaggagaacagagaaggagtggctctactctgct
gctgtggaggagctgctcgctgagtacctggacagattttcggaggtgtttgacttggtg
tccagaaacagtcacgatgatgttttctatgaggatgacatctggcctggagaggaccag
aacggagcagagaaggtggctgaaatcagctcgtggctgaaaggccacccggtcagctcc
atcagcaggacgtcatgtgacctccaggtgctcgactccgccatcgtggaaaagatcgag
gaagcagtggacaagaccaaggtgaagaagagcaccaagaaagtccgtgtgaccgtgaag
cctcatctcctcttcaggcccttggagcagcagcagggtgtggttccagacccggaagca
gagtatcgcctgtttgacagagtcgtcaacatcagggagagcttcaccgtcccgctggga
ctcagagggacgatcatcggcattaaaggagcggatcgtgaggcagaggttctctatgaa
gtgctgtttgatgaagaattcgcaggaggtctcaacatcaggtgtgcgtctcctcgtggt
taccgcctccctccctgcgctctgattaatctttcccacggaggccggatggatcacagc
tcccacaaactcacagccatcgtcaaacctcagcccgtcgctggcgccaacttcaactcc
cagcgccagctggcgggcctcaaccactcgccacgctcccccttcgtacccacgcagcat
aacaacaaacatggcgtggtgaaagccgtctcccagggcaacaggagctctccctctaca
ggtctcatccagaaacagcagggcaagaataaagaggagtacaccaatgtgtggcagtct
ctgcagaacgcaggtcctcctaacaaacctcctgctcactggcacaataatgaaggacct
tcccaacaggaatggaaccagcaggacaacaaagctactccggctggtggtatcagactg
ttgaagaaaaatgaagatgtcggctccctgttctcctcacagagctcagctaacaaggct
atgactgaatttgaggaccttattgccagtttaaagatctcccagggtagccaacaaacc
ccgccccctcctgcacctcaacaagcccccagcagccagtcagatggtcccttgtctcca
cagtcctttgccatgaagggaaccctggttctgaaggagatgcttaagattgacggagct
ggaacaggaagtccttctcctcatgaaatggcgaacgcagccccctctgctggccagcag
cagagcaggagacggtcgtcgaagaaactcgctgccaagatgaacaacgacacggccgcg
tcaccgtctccagcatcagctgcctcggccaacgccgtgctgagcagtaaggtgtcggag
ctggcccttgtgtgcgtggggctgggcatggcgccgcccgacttcagctacatcggcaac
agacagggtctggtcgtgtgtcaggtgaagctgtccaacgggctgatggttcacggtccg
cagtgccaatcagaaaacgatgccatggagaaagctgccttctttgccctacagagactg
aactcagtgggctcgggcttccccctcccccctcctctgtacccaggagttggtccgatc
cgagctccacctatgggagccatgacgcctgtcttcaaccagcaaggaggtttgctgttg
ccccctcagggttacggccccgcccctctgtggggaatgactctgcctccccaccaccag
aaccagtcgttctttggagcagcagggaccttccccggtgccgcccgccccccacctaca
acaacagtgcccatcggctcacacaaccagttcatcccgttacaggtgacgaagaagcga
gtgtcagccaacaaaaagaaccaagaaactcgagagttttacagcgctgcccaaattgtt
gccaagaaccaatcacagagagcccagaaccagccctttggccaatcacaagctcagagc
ggaaatctcgacccctcctcatccagccctggtctagcagatgccgtttccacgacgatg
gcagacccgcacacgccccctcgacagagcatgccagcatcaggccacacccccggctcc
gcctccaagaggaagcacaggaagttggctgtcaacttcgaggcaactaaagtctcagag
tga
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integrated database retrieval system
