Embiotoca jacksoni (black perch): 138208108
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Entry
138208108 CDS
T10523
Symbol
pdcd11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
eja Embiotoca jacksoni (black perch)
Brite
Ribosome biogenesis [BR:
eja03009
]
Eukaryotic type
90S particles
Other 90S particles
138208108 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
138208108
NCBI-ProteinID:
XP_069021902
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Position
Unknown
AA seq
1823 aa
AA seq
DB search
MLQTPETTSSMASVEEDFPRGGTSRKPTESKIVVQRTEVDNLFQSNEQTETKKRKGASKE
DGTKLKKQKTVDKKEDGLTLNTAAKCVEILHIKNVKEGMLMLGCVKEVTDFEVTVSLPCG
LQGFLSIKNICDSYAKLLSEQLDSPDTEEICSLQHLFHPGMVLRCVVDRLDIAKGGSLSI
QLSINPKTVNKSLSSSTLKAGMVLSGCVESSEDHGCIVDVGVSGTKAFLPKSAITVKSNN
PEELKVGQYVTCLVEAVKNDGRVVHLSVDPRAVAQTCAQANQGWNLTNILPGLLVKAAVK
KVTKHGMFLDFLSSFSGQVDFLHTEQTSSYSEGDQVRACVLYVEPSSRLVGLSLRSYLVQ
PGTSVDSTPADGDRAGEVVKGCSMTALHHMSGAVLEMPDKTLAFVHRNHLKESNEPSNEN
RVLAMSEHTCRILNFSPMDQIHFVSLRKSVIDKPFYRYQDLQAGQIVEGKVSVLLSHGMV
VHISDHIKGLVPRTHLSDIVLKNPEKKYSEGMKVKCRVLSVDAQNKKLYLTRKKALIDSS
LRLFLSYSDARPGRVSHGYIVCIKDFGCIVRFYNNVKGLVPLSELSSEPVVSPEDVFYVG
QVLKAKVLQCDSDKAKMVLSFKAVSEGETEEAAKPALDCEVGKRLEAKLLKKSVNGLEVA
ILPEEIRAVLPTMHLSDHVSNCPALWESLQEGDVISNLICFNKNKQNISVTKKPTVRWSL
EEGVVAKDFSEITVGRQLIGWIKNIMSYGVFVEFPYGLVGLAPKSAMTDKFLSDTTAAFQ
LGQTVVAKVTNLDEEKRRFLVTLKVSEVISPAGDAQTRLINGLQERKAVNEMLAVRDSSE
LRQQLAALSAGQKLKLTVDAVKDSGATFKSDDLSSATIQATKYHVMGVNLTAGQKVTAVV
LHVDIMSTCVHVSIISKLVAKKKSLTEGSNHTAMIQYIDKDFAVISLDDTAQLTMIQTSS
HLNEVLLSESYKLKAGMTLTVEVIEPSCEEMQGLPLVAWQRSAPKRQRTTSENQSGSKGH
CFGEILQGKVRTVKPTCIQVTLEDGSTGSVHVSEVMEAADVCMKSFPTSSVKVGSVVTAR
VIGGREASSHRFLPFSHPKFTYNICELTLIPSKMDASVDFKPVTAKEKLNSLKVGEEITG
FVSKFHPDRKSLDITTDPCVTGTVELLAMITDPKDAGHPEKLYKLGQAVRVKVVEVSVKP
HRFVLSLTGVYKLEEGSTTLGMVTKILPQVGLHVKLPFGGVGTVSVTDLADAYKPNPLDT
YSKDQLVRCSLLGNNNNNKWQLSLRPSRLNPQQAKPVKDLEVESVAQLKVGQMIRGYVKS
VGEQGVFIRLSRSITGRAQLQKSTKYLFGKHKVLSEHLPPNMLLTTKILSINREEELVDL
SLLPADTGKPDVLPESLGLPLRPAGEEKKHDTKKKKRPLSDSEQKQAESQIPKKKKKTRK
SKTDDSDSGVEVYFREEEEEEKEDEEPHSAKQVSSSSAGPSRLQVAAGFSWDVGLSSLKP
ASAAQEGDSSDGEDHDGGTKPQKKSRHELEQEKKVAEKALVQREAELMDPSLRPEDAAAF
ERLLLASPNSSLLWLQFMAHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLE
NMYGTEESLKKVFERAVQFCEPMPVYQQLADIYAKSDKTKEAEGLYKMMVKRFRQNKAVW
LSYGTFLLQQGQSDAASGLLQRALKSLPSKESVDVIAKFAQLEFRYGDAEKGRSMFDKVL
TSYPKRTDLWSVFIDLLVKHGAQKDIRALFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTP
QSIQSVKEKAVEFVEAKGTEAAN
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atgttacagacgcctgaaacaacatccagcatggcgtcagtggaggaggacttccctcga
ggtgggaccagcaggaagcccactgagagtaaaatagtggtgcagcggactgaggtggac
aacttgttccagtcaaatgaacaaacagaaacgaagaagaggaaaggagcctccaaagaa
gacggcacgaagctcaagaagcaaaagacggtggataagaaagaagacggcctgacgctc
aacacagcggccaaatgtgttgaaatcctacatatcaagaatgtgaaggagggcatgctg
atgctgggctgcgtgaaggaggtgaccgacttcgaggtgacggtcagcctgccttgtggc
cttcagggcttcctcagcatcaagaacatctgcgactcgtacgccaagctgctcagcgag
caactggactcgccggacacggaggagatctgctccctgcaacacctgttccaccccggc
atggtgctcaggtgtgtggtcgacaggctggacatagccaagggaggctcgctcagcatt
cagctgtcaatcaatccaaagacggtcaacaagagtctcagctcgagcactctgaaagct
ggaatggtcctgagcgggtgtgtggagagttcagaggatcatggctgcatcgtggacgtt
ggcgtcagtggaaccaaagctttcctgccaaagagcgccatcacagtcaagtccaacaat
cctgaagagctgaaagtgggtcagtatgtgacctgtctggtggaagccgtgaagaacgac
ggccgtgtggtccacctgtctgtcgacccccgcgccgtcgcccagacctgcgctcaagcc
aatcagggctggaacctcaccaacatcctgccgggccttctggtcaaagctgccgtcaag
aaggtgaccaaacacggtatgttcctggacttcctgtcgtccttcagcggccaggtggac
ttcctccacacggagcagacgtccagctactcggagggagatcaggtgcgagcgtgtgtg
ctgtacgtggagccgtcctcccgtctggtgggactgagcctgcgcagctacctggttcag
cccgggacctcggtggactccactcctgctgacggggatcgggccggtgaggtggtgaag
gggtgcagcatgacggctctgcaccacatgtctggagccgtgctggagatgccagacaaa
acgctggccttcgtacatagaaaccacctgaaggagtccaacgagccatccaatgagaac
agagtgttggcgatgtccgagcacacctgcaggatcctgaacttcagccccatggaccaa
attcactttgttagtttacgaaagagtgtgattgacaagccgttctacagatatcaggat
ctgcaggccggccagatcgttgaggggaaagtgtcggtcctgctgagtcacggcatggtg
gtgcatatctcggaccacatcaaaggtctggtgcctcggacgcacctctccgacatcgtc
ctcaagaacccggagaagaagtacagtgaaggcatgaaggtcaaatgtcgggtgctgtcg
gtcgatgcacagaacaagaagctgtacctgaccaggaagaaggctctgattgacagctcc
ctgcggctgttcctcagctacagcgacgcccgtcccggccgcgtgtcccacggctacatc
gtgtgcatcaaggacttcggctgcatcgttcgtttctacaacaacgtcaagggtctggtg
ccgctgagcgagctcagctcggagcccgtcgtcagccccgaggacgtcttctacgtcggc
caggtgttgaaggctaaagtcttgcagtgtgacagcgacaaggccaagatggtgctctca
ttcaaggccgtgtcggaaggagaaacggaggaagctgccaagcctgcgttggactgtgag
gttgggaagaggctggaggcaaagctgctgaaaaagtccgtcaacggtctggaggtggcc
attctccctgaagagatccgtgccgttctacccacaatgcacctctccgatcacgtatcc
aactgcccggcgctgtgggagagccttcaggaaggagacgtcatctcgaacctcatctgc
ttcaacaagaacaaacaaaacatctctgtgaccaagaagccgacagtgaggtggtccctg
gaggaaggagtggtggccaaagatttctcggagatcaccgtcggccggcagctgattggt
tggatcaagaacatcatgtcttacggcgtgtttgtagagttcccgtacggcctcgtcggt
ctcgcacccaaatcggccatgaccgacaagttcctcagcgacacgacggcggccttccag
ctcggccagacggtcgtcgctaaagtgaccaacctggacgaggagaagcgtcggttcctg
gtgacgctgaaggtttcggaggtcatttctccggcgggggacgctcagacccgactcatc
aacgggctgcaggagaggaaggccgtcaacgagatgttggctgtgagagatagcagcgag
cttcgccagcagctggctgctctgtctgcaggtcagaagctgaagctgactgtggacgcc
gtgaaggacagcggagccacgttcaagtcagacgacctgagcagcgcgaccatccaggcc
accaagtaccacgtcatgggcgttaacttgactgcaggacagaaagtcactgcggtcgtc
cttcatgtcgacatcatgtccacgtgtgtccatgtttccatcatctccaagctggtggcg
aagaagaaatctctgactgaaggatcaaaccacacagcgatgattcagtacatagacaaa
gactttgccgtcatctcactggacgatacggcgcagctgaccatgatccaaaccagcagc
cacctgaatgaggtcctcctgtcagagtcctacaagctgaaggccggtatgactttgacc
gttgaagtgatagaacccagttgtgaggaaatgcaagggctccccctggtggcgtggcag
cgcagcgcaccaaaacgacagcgcaccacctccgagaaccagtcgggctcgaaaggccac
tgcttcggggaaatcctgcaggggaaggtgcgcacggtgaagcccacctgcatccaggtc
acgctggaggacggaagcacgggcagcgtgcacgtgtccgaggtgatggaggctgccgac
gtgtgcatgaagtccttccccacgtcctcggtgaaggtgggcagcgtggtcaccgccagg
gtcatcggtggacgagaggcctccagtcacagatttctgcctttctctcatcccaaattc
acgtacaacatttgtgagctcacacttatacccagtaaaatggacgcgagtgtagatttc
aaacccgtcacagcaaaagaaaaactgaacagcttgaaggtcggagaagaaataacgggc
ttcgtatcaaagtttcatccagacaggaagtctttggatatcactactgatccttgtgtc
accgggactgttgagctgctggctatgatcaccgatcctaaagatgccggccacccggag
aaactgtacaagctgggccaggcagtccgcgttaaagtggtggaagtgagcgtcaaacct
catcgctttgtgctgtcgctcaccggtgtctataaactggaggaaggcagcaccactttg
gggatggtgactaaaattctgccacaagtcggcctccacgtcaaacttcccttcggcggc
gtggggacggtttctgtcacggacctcgctgacgcctacaagccgaacccgctggacacg
tacagcaaggatcagctcgtcaggtgttcccttctaggcaacaacaacaacaacaagtgg
cagctgtctctgcgtccctcgaggctgaatcctcagcaggccaagccggtgaaagacctg
gaagtggagtctgtagcccaactgaaggtcggccagatgatccgaggctacgtgaagtct
gtgggggagcagggcgtcttcatcaggttgtcgagaagcatcactggaagagctcaactc
cagaagtctacaaagtaccttttcggcaaacacaaagtcctctctgagcacctgcctccc
aacatgctgctcaccaccaaaatcctcagtatcaaccgagaggaggagctggtcgacctc
tctctgctgcccgccgacaccgggaagcccgacgtcctgccggagtcgctcggcctgccg
ctgcgtcccgccggagaggaaaagaaacacgacaccaagaagaagaaacgcccgctgtcg
gacagcgagcagaaacaagccgagtcccaaatcccaaagaagaagaagaaaacgaggaaa
tccaagactgatgacagcgacagcggagtggaggtgtacttcagggaggaggaggaggag
gagaaggaggatgaagaaccccattcagcaaaacaggtctcatccagctcagcgggtccg
tccaggctgcaggtggcagcaggtttctcctgggacgtggggctgagctccttgaagccg
gcgtctgcagcgcaggagggcgactccagtgatggagaggaccacgacggaggcacgaag
ccccagaagaagtcccgccacgagctggagcaggagaagaaggtggcggagaaggcgctg
gtgcagcgggaggccgagctgatggatcccagcctgcggcccgaggacgcggctgcattc
gagcgcctgctgctcgcttcacccaacagctcgctgctgtggctccagttcatggctcac
cacctgcaggccacgcagatcgagcaggcccgggccgtcgccgagagggccctcaaaacc
atctccttcagggaggagcaggagaagctgaacgtatgggtcgccctgctcaacctggag
aatatgtacggcacagaggagagtctcaagaaagtgttcgagcgggccgtgcagttctgc
gagccgatgccggtgtaccagcagctggccgacatctacgccaagtccgacaaaaccaag
gaggcggagggtctgtataagatgatggtgaagcgtttccgtcagaacaaggcggtgtgg
ttgagctacggcaccttcctgctgcagcagggtcagagcgacgctgccagcggtctcctg
cagagggcgctgaagagtctcccctccaaagaaagtgtggacgtgatcgccaagttcgct
cagctggagttccgttacggcgacgcagagaaaggtcgcagcatgttcgacaaagtcctg
acgagctacccgaagcgcaccgacctctggtccgtcttcatcgacctgctggtcaaacac
ggagcacagaaggacatcagggcgctctttgaccgagtgatccacctgagcgtttccgtg
aagaagatcaagttcttcttcaagcgctacctggagtacgagaagaagcacggcacgccg
cagagcatccaatcagtcaaagagaaggccgtggagttcgtggaggcgaaaggaaccgag
gccgccaactaa
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