Embiotoca jacksoni (black perch): 138208647
Help
Entry
138208647 CDS
T10523
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138208647
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
DUF7324
Cyt_c_ox_IV
Motif
Other DBs
NCBI-GeneID:
138208647
NCBI-ProteinID:
XP_069022811
LinkDB
All DBs
Position
Unknown
AA seq
1442 aa
AA seq
DB search
MTYALVYRSPGGSGGGAASGGCGGTSSSVLITSGSSRSGGTGGSGASKGTGGISITTAGA
SSAGAGRSASGAAGASGAGGGSSNMSYSFSSSGRESKREGLGLGAVTVSTVTKSSHSAAG
CGEAKRGSSSSSAITYSSAAKERKSVTNMAQALSEVFDESSSTNSSPEYNRKEYGSSSAT
STFATRGRSQSRESEIRARLQSASPSASWTELDDVKRLLRGRSSTGTSPARSPNNTLPIP
KKASVETRTLSESSGTEQYGSVWSGGVSSSHGYNTNPNNLSTTSGLYLSGVQNNLTLGSP
SVSGGLSAGGSVPVYGVQNNLTSTGPALLSPATTAATTQIVYGVQKNVTGMSTTTARPSS
PANDEASGKDFKFVLIEKENAPVKKETERLVMAKDTGKQFMSATPAAPSAMYSVDSLKRE
KQKLSSSTMEEGTDASTLKVATKDKATYAEIRNDESSLGFWSCCSWWKWLLGLLLSLLLL
LGLLFGLIAVGEEVKRLRTRVEALEAVTGTASARSSRFSASSGINMIDPLDSTRIDKTSA
GSTLTGSDNGIGLGAAGPGGGGGAGTGLGQDSAALQRAVQQLVRAELRSGAVRETLAYSL
KGERGEPGSKGDPGALGQKGDGGFPGLPGPPGQMGHPGLDGPRGPKGSAGEPGAEGPTGQ
RGREGPMGPRGETGPPGFGEKGDKGSQGELGRSGPAGVAGPVGPKGATGEHGASGSPGAP
GLKGFQGEAGAPGAKGDRGTPGLPGTKGENGERGSRGPAGELGQPGPQGPAGPKGTKGIT
GESGSMGPPGVRGQPGVPGDVGPPGSPGVQGPPGIAGNPGHPGGKGEPGSPGKVVAAAGS
DTVAIPGPPGPSGPPGPAGLPGLSGPIGPAGLPGQLGPKGERGEKGEQGEKGVKGEHGKP
GEPGTSTASETVTETRMAGRPGPPGPPGPPGEPGETLAGPPGRRGPPGEPGVGKPGPPGD
KGEPGSFVPTSETFFAGPPGPPGPPGPEGGRGPQGYQGEPGQPGLPGIPGEPGVGFPGQP
GPRGPHGPKGPPGPEGPPGSPGVSAGSSFSPGHPGPPGPPGRDGSGSGSADMGQYIAEYL
QRGGIRDYLTGSPGSPGPPGPPGSPGSGGDGLVNDVASRVIAYIQGEDVRRYISGQPGPP
GPPGAPGHGSYNFNTQEVAERVFSIMNERGVAGVPGPPGPPGAPGGFVLKQMFIFIIHPG
SGPPGVPGPPGHPGPAGPPGFGNYISSDIRDYLQSVSFRGPPGPPGPPGPEGPPGQIRGL
VSYTEHGTGETLKAHRQEYIKTRGLLHDIVKDYNSRVFQGPPGPPGPPGPAGHSRGFGSH
GNATDVVEYIKSHGLPRDTERGHNERVVRGPPGPPGPPGPPGYSRLFGSHTNVTDLVEYF
RRHGATVGPPGRPGPRGDAGLPGPQGERGERGFPGPEGQRGPQGERGELTVMSRRRRRDA
GV
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgacctacgccctagtctatagatctccaggtgggtcaggtggaggagctgcgtcaggg
ggctgtggcggcacaagcagctccgttctgatcacatccggcagctcccgctccggtgga
accggtggatccggagccagcaagggcaccgggggcatcagcatcaccaccgcaggagcc
tcgtctgcaggcgcaggtcgttcggcatcgggggccgctggggcctctggcgcaggaggt
gggtcctcgaacatgtcctacagtttttcaagcagtggcagagaaagcaaaagggaaggc
ctcggactcggtgccgtgacggtttccacggtgaccaagtccagccacagcgcagcaggt
tgcggggaagcgaagaggggatcatcgtcatcctcagcgatcacttattcatctgctgcg
aaggagaggaagagcgtgaccaacatggcgcaagctctgtcggaggtctttgatgaaagt
tcaagcacgaactcatctccagagtacaacaggaaggagtatggaagttcaagtgcaaca
tcaacttttgccactagagggagaagtcagagcagagagagcgagatcagagccaggctg
cagagcgcttctccttcagcaagttggacggagctggacgacgtgaagcgtctgctgagg
gggagaagctccaccggcaccagccccgctcggtcgcccaacaacacgctgcccatcccc
aagaaggccagcgtggagaccaggaccctgtcggagagctccggcacagagcagtatggc
agcgtttggtcgggaggtgtgagcagcagccacggttacaacaccaaccccaacaatctg
tccacgacctccggcctttacctgtcaggagttcagaacaacctgactctcggttctccc
tctgtgagcggtggactctctgccggcggctccgtaccggtgtacggcgtgcagaataac
ctgaccagtaccggccccgctctcctctcccccgccaccaccgccgccaccacgcagatc
gtttatggcgtgcagaaaaatgtcacagggatgagcacaaccacagcaagacccagcagt
cccgccaacgacgaggcctcggggaaagacttcaaattcgtgctgatagagaaggagaac
gctcccgtcaagaaggagacggagcggctcgtcatggccaaagacaccgggaagcagttc
atgtccgccacgcccgctgctccctccgctatgtactctgtggactcgctgaagagagag
aaacagaagctatcatccagcacaatggaggaaggaacagatgcttcaaccctgaaagtt
gcaacaaaagacaaagccacctatgcagagatccgtaacgatgagtcgagcctcggcttc
tggtcctgctgcagctggtggaagtggctgctcggcctcctgctcagcctgctgctcctc
ctcggcctcctctttggactcatcgctgtgggtgaagaagtgaaacgcctcaggacccgc
gtggaggctctagaagccgtcaccggcaccgcgtcggccaggtccagccgcttttcggcc
tcttccggcatcaacatgatcgacccgctggactcgacgcgcatcgacaagacctccgcg
ggttccaccctcaccggctctgataatgggatcggcctgggggctgccgggccgggagga
ggaggcggcgcggggaccggactgggtcaggacagcgctgccctgcagagagccgttcag
cagctggtcagggctgaactccgctcgggtgctgtgagagaaactttggcgtactcgttg
aaaggggagcgaggagaaccgggttctaaaggtgatccaggggcactgggacaaaaaggt
gatggcggtttccccggcctgccaggtcctcccgggcagatgggtcacccaggattggat
ggaccaagaggaccaaagggaagtgcaggtgaaccgggtgccgaggggccaacgggccag
aggggccgggagggaccgatgggcccccgaggagagaccggaccacccggttttggagag
aaaggagataaaggttctcaaggtgagctgggtcgttctggtcctgctggtgttgctgga
ccagtgggtccaaaaggtgccacgggagagcacggagcttcaggaagtcccggtgctcct
ggtctgaagggtttccagggtgaagccggagctccaggagctaaaggcgaccgaggaact
cccggcctgccaggaaccaaaggagagaacggagagaggggatcacgtggacctgcaggt
gaacttggacaacctggaccgcaaggccctgctggaccaaagggaacgaaaggaattaca
ggcgaatcaggttcaatgggaccccctggtgtgagaggacaacctggggttcctggagat
gtcggtcccccaggctctccgggggttcaaggaccgccaggtattgcaggaaatccggga
caccctggtggtaaaggtgagccgggatcacctggtaaagtcgtcgccgccgctggctct
gatactgtcgctattcccggacctccgggaccatccgggcctccaggtcctgctggactt
cctggtctgtctggtcccattggccctgctggtctcccaggacaactgggtccaaaggga
gaacgaggggagaaaggagaacagggagaaaagggagtgaagggggagcatggaaaacct
ggcgagcctggtaccagcaccgcgtcagaaaccgtcactgagaccagaatggctggacgt
cctggcccacctggacctccagggcctcctggagaacccggtgagactttagcgggtcct
ccaggccgccgaggtccacccggagagccaggtgttggtaaacctggacctccaggagac
aaaggagagcccggtagctttgttcctacatcagaaaccttctttgctggaccaccagga
cctccaggacctccaggcccggagggtggccgaggacctcaagggtaccaaggtgaacca
ggacaaccaggtcttccaggaattcccggagaacccggtgtcggttttccaggtcagcct
gggcctcggggacctcacggaccaaaagggcctccgggacctgaaggacctcctggttcc
ccaggagtctctgctggtagctcattcagtcccggacacccaggcccacctggtccacct
ggaagagatggaagcggatccgggtcggctgatatgggccagtacattgcagagtacctt
cagcgtggtggcatcagagactacctgaccggatctcccggttctcccggtcctccgggg
cctccgggctccccggggtctggaggggacggactcgtgaacgatgtcgccagccgagtc
atcgcctacattcagggagaagacgtgaggagatacatcagtggtcaaccgggtccaccg
ggaccccccggagctccgggccacggcagctacaactttaacacgcaggaagtggctgaa
cgtgtcttcagtataatgaacgagaggggcgtggccggtgtccctggacctcctggacct
cccggggctcctggaggctttgttctgaagcagatgttcattttcattatccatccaggt
tccggtcctccaggtgtccccggtccaccaggacaccccggaccagcaggtccaccagga
ttcgggaactacatcagctcagatatccgtgactacctgcaaagcgtctccttcagaggc
cctccgggccctcctggtcccccggggcccgagggccccccgggtcaaatccgtggactg
gtttcctacactgaacacggcaccggagagacactcaaagcccaccgacaagaatacatc
aagactcgcggtttgctgcacgacattgtgaaggactacaacagccgtgtcttccaggga
ccaccgggaccaccggggccgccagggcccgccggacacagccgagggtttggttcccac
ggaaacgccacggacgtggtggaatacatcaaatctcacggtctcccgcgcgacaccgaa
cggggccacaacgagcgcgtcgtccgggggcctccggggccgccgggtcctccgggcccg
ccgggatacagccggctgtttggctcccacacgaacgtcactgatttggtggaatacttc
agaagacacggagccacagtgggaccgcctgggagaccaggaccgagaggggacgcggga
ctcccgggaccacaaggagagagaggtgaacgaggttttccagggcctgaaggacaaaga
ggaccacaaggtgaaagaggagagctcacggtgatgtccagaagaagaaggagggacgcc
ggtgtttga
DBGET
integrated database retrieval system
