Embiotoca jacksoni (black perch): 138208721
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Entry
138208721 CDS
T10523
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03030
DNA replication
eja03410
Base excision repair
eja03420
Nucleotide excision repair
eja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138208721 (rfc1)
03410 Base excision repair
138208721 (rfc1)
03420 Nucleotide excision repair
138208721 (rfc1)
03430 Mismatch repair
138208721 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eja03032
]
138208721 (rfc1)
03400 DNA repair and recombination proteins [BR:
eja03400
]
138208721 (rfc1)
DNA replication proteins [BR:
eja03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
138208721 (rfc1)
DNA repair and recombination proteins [BR:
eja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
138208721 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_30
AAA_5
RuvB_N
AAA_17
Rad17
AAA_14
AAA_33
nSTAND3
AAA_7
BRCT_2
AAA_18
AAA_16
NTPase_1
RNA_helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
138208721
NCBI-ProteinID:
XP_069022905
LinkDB
All DBs
Position
Unknown
AA seq
1201 aa
AA seq
DB search
MDIRRFFAPAAAKPAVQKPAPNRNIKPEEEEEEKTKKKRKKQQQQQQPLSSDEEVKKKET
TKVKSSKTEQHKDSERKRKKRAVIASDSDEEEKEQPGRKTKKPPKEKRKTTKAEPPPKKD
PVQYVSETDSDSDTFQTLKTKPKQNGFGKTTKSDAGVREGTVKSPVRPSSSSQGKAGVKS
PPAPATPKSAPPPQPKQTPTSLFDYFGSGTIQRSDKKLVASTKRKASSQDIDDLISDEEI
ARQLQMEEDMELEKQVHEDEEFARTLAMLDKEPKAKKACKDSNEKQSLSTTSEKSSADAA
ACSTSSLSRTTRSTSEDVISSSPKKDTAPVKTSSKLALLKKKNEARDEWPKSKTPTSPTK
MKISPKKEPVASPISYKKFTPKTGTTPTALKTSPKKPESTSTSPDDSEKKRISTSAYRNF
LNRDGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDDAKSLIERYGGKVTGNISKKT
SYLVQGRDSGVSKLEKAESFGTTILDEDGLLELVRTKPGKKSKYEIAAEAENKALKTRTA
PSKTSKITPKAQKISPSKGNSTSPHTPSPSKTGLAQGHAARRSGNGGTPPGRGCGHTARR
ELGLSSSSSSSASSAPGPSSPSLTGDGASLLWVDKYRPRSLKTVIGQQGEQSCANKLLRW
LQNWYKHHSGGAEKPAAARFGKFGGGGGRDDGSGHKAALLSGPPGVGKTTTAALVCEELG
FSYVEMNASCTRSKNSLKEVVAESLNNTSIENFYKGTSQTVSSKHVLIMDEVDGMAGNED
RGGIQEMIGLIKSSKIPIICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSLAFK
EGIKIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVMTYDQCKSDAASARKDTKLGPFD
VCRRVFTSGEQTAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAARGDMKSHLVLLSK
TADSISDGDLVDRRIRSRQNWSLLPTQAIYASVLPGELMRGYMAQFPVFPSWLGKHSSTS
KHSRIVQELNSHMSLKTMSGRQAVNLDYLHYLRQALLSPLQRRGAQGAAQAVQLLDDYQL
VKEDVDSIMEISVWGGQPDPYSKLDPKVKAAFTRAYNKEVHLTPYSLQAVKKGRRGGGGE
SEMGGGEDAGQDGQESEDEGDGLKVDAMIKQKKVKATKESNQEKKEGSGKDKGKGKGKAK
K
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccggctgcagccaaacctgcggtgcagaaaccagcc
ccgaatagaaacatcaaaccagaggaggaggaggaggagaagacgaagaagaagaggaag
aagcagcagcagcagcagcagcctctgtcttcagacgaggaggtgaaaaagaaagaaacc
accaaggtaaaaagctccaaaacagagcaacataaagacagtgagagaaaacgaaagaag
cgcgcagtcatagcgtcagactctgatgaggaggagaaggagcagccagggaggaagaca
aagaaaccccccaaagagaaacggaagaccaccaaggcagagccgcctcctaaaaaagat
cccgtgcagtatgtctctgaaacagactcagacagtgacaccttccagacattgaagacc
aaacccaagcagaacggcttcggaaaaacgaccaagtcggacgcaggagtcagagagggt
acggtgaagtctcctgtcaggccctcctcctcctcgcaggggaaagctggggtgaagtct
cctcctgcgcccgccaccccaaagtcagctccacctcctcagcccaaacaaactcccacc
tcactcttcgactacttcggcagcgggaccattcagcgctcagacaagaagctggtagcc
agcaccaagcgaaaggcttcgagtcaagacatagacgacctgatcagtgatgaagaaatc
gccagacagctgcagatggaagaggacatggagctggagaaacaggtccatgaggacgag
gagttcgccaggacactggccatgctggacaaagagccaaaggcaaagaaggcttgtaaa
gattccaatgaaaaacaaagtttaagtacaacgtccgagaagagcagcgcagacgctgct
gcctgcagcacgagcagcctgtcaaggaccactcgaagcacgtcggaggacgtgatcagt
tcgtctcccaagaaggacaccgcgcctgtcaaaaccagctccaaactggccttgttgaag
aaaaagaacgaggcgagggacgaatggccgaagagcaaaacacccacttcacccacaaaa
atgaaaatctctcccaaaaaggagcctgtcgcttcgccgatctcatacaagaagttcacg
cccaaaacaggaaccacgcccaccgcgctcaaaacctctcccaagaaacccgagagcacc
agtacgagtcctgatgactcggagaagaagaggatcagcacttcagcttacaggaacttt
ctcaacagagacgggccgcgagctctgggctccaaggaaatcccacagggagcagagaac
tgtttggagggctgcgtgttcgtgctgacgggcgtcctggagtcgatggagagagacgac
gccaaatctctgatcgagcgctatggaggaaaggtgacgggcaacatcagcaagaagacg
agctacctggtgcaaggcagagacagtggagtgtccaagctcgagaaggcggagagtttt
ggcaccacgatcctggatgaagacggtctgttggagctggtcagaaccaaaccaggaaag
aagtcgaagtacgagattgctgcagaagccgagaacaaagccttaaagaccaggactgcc
cccagcaagacttcaaagatcacccccaaggcccagaagatctctccctccaagggcaac
tccacgtccccccacaccccgagcccgtcaaagaccggcctggcacaaggccacgctgcc
aggaggagcgggaatggcggcaccccgccggggagaggctgtggtcacacggcccgcagg
gagctgggcctatcctcctcctcctcctcctccgcctcttcagccccaggaccctcatct
ccatccctgacaggggacggcgccagcctgctgtgggtggacaagtaccgtccgcgctct
ctgaagacggtgatcggccagcagggggagcagagctgtgccaacaagctgctgcgctgg
ctgcagaactggtacaaacaccacagcggaggcgccgagaagccagcagctgcgcggttc
ggtaagttcggaggaggaggaggaagagatgatggctcaggacacaaagctgctctgctc
tctggacctccgggggtggggaagaccaccacagctgccctggtctgcgaggagttgggc
ttcagctacgtagagatgaacgccagctgcactcgcagcaaaaacagcctaaaggaagtt
gttgctgagtcactcaacaacaccagcatcgagaacttctacaaaggcacgtctcagact
gtgagcagcaaacacgtgctgatcatggacgaggtcgacggcatggctggaaacgaggac
cgcggaggaatccaggagatgatcggtctgatcaaaagttctaagattcccatcatctgc
atgtgcaacgatcgtaaccaccagaagatcaggtcgctggccaactactgcttcgatctg
cgcttccagaggccgcgagtggagcagatcaagggagccatgatgtccctcgccttcaag
gagggaatcaagatcccgccgccggccctgaacgagatcatcctcgcctccaatcaggat
gtccgacaggtgatccacaacctgagcatgtggtcggccaaagacaaggtgatgacttac
gaccagtgcaagtccgacgccgccagcgcccgcaaggacacgaagctcgggccgttcgac
gtgtgcaggagggtgttcacctcgggggagcagacggcccacatgagcctcatcgacaag
tccgacctgtttttccacgactactcgctggcgccgctgttcgtccaggagaactacctg
cacgtccgtccagccgcggcacggggggacatgaagtcccatctggtgctgctcagtaag
acggcggactccatctccgacggagacctggtggacagacggatccgctcgagacaaaac
tggtcgctgctgcccacccaggccatctacgccagtgtgttaccaggggagctcatgaga
ggctacatggctcagttcccagtcttccccagctggctcggcaagcactcctccaccagc
aaacactcccgcatcgtgcaggagctgaactcgcacatgagcttaaagacgatgagcggc
cggcaggcggtgaacctggactacctgcactacctgcggcaggcgctgctgtcgccgctc
cagcggcgcggcgcgcagggcgccgctcaggcggtgcagctgctggacgactaccagctc
gtcaaggaggacgtggacagcatcatggagatcagcgtctggggcggacagcccgacccc
tactccaaactggaccccaaggtgaaggcggctttcacacgggcgtacaacaaagaggtt
cacctgacgccgtactccctgcaagctgtgaagaagggccgccgaggtggcggaggggag
tcggagatgggggggggggaggacgcgggccaagacggccaggagtccgaggacgagggc
gacggcctcaaagtcgacgctatgatcaaacagaagaaggtcaaagccaccaaggagtca
aatcaggagaagaaagaaggctctgggaaggacaaaggaaaggggaaaggcaaggcgaag
aaatga
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integrated database retrieval system
