Embiotoca jacksoni (black perch): 138208830
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Entry
138208830 CDS
T10523
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
138208830 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
eja04121
]
138208830 (slx4)
03400 DNA repair and recombination proteins [BR:
eja03400
]
138208830 (slx4)
Ubiquitin system [BR:
eja04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
138208830 (slx4)
DNA repair and recombination proteins [BR:
eja03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
138208830 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BTB
Slx4
zf-met
zf-C2H2_jaz
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
138208830
NCBI-ProteinID:
XP_069023082
LinkDB
All DBs
Position
Unknown
AA seq
1732 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRKKPEEPKQPSRKAEHHQPTSQPGGDKRRKPCKRDGDSGSK
VTSSQPVSAAGSGHESGDAGSSVGPSAAAGPRADGGPNAKDKVLLRMQQFKRSSPRRMVH
EDKIQPTNQDDGDDCPPLVQQQTREAPDSLGSDRPAEPLDGDEALALRLQQELDSEAARV
RTVDLEDRGLFFCQICSRDLSHMTPEGRTQHINRCLDDSEESAPAPLPPPPPAPSGVADC
PICGKKFKSQKSRSAHLKRCSSAMGISPAVLLQVLQRQAEENQSAAAAAANTHVQGTKRK
GPTKPGLPASKKPRKKTEPVDEETMVALALSSSLLEQETQQQRQMEALRRLQTETRSSMT
LNRRAVAGKGRGKRKKGAAPRPPPLLLCQDAQSALTRLQERVSALLLCSRAPSPPTPTRS
PSALPGRSGAAPLWQKSTLQDRGSTSLSDFYAPEIRELFMAVESVTTDAASFQPESSVQP
VTEGTPVPGTSASIPPSSPKTASCSTALSSPGTGQLLVGSQALRDLMDLAEDGMTLTQWG
YTAKDKQFDLRLSGFVQEESEEQENLCVSGFLPETAHTHSRSQAMRTSDQPGADGDRDRD
RGRGSNQSVALSRLASDLSSMVNNPQLSDLQLQVDAGEVFFAHSFMVYARCPLLAEMVHE
SGFGVQEAGAPAAQRVLLSDVPGQAVLAVLQYLYTASCSIPASLQPHVLELASRFDLQEL
QQLCQLHREEADRTNQEENSSRTDQAFMELLQSMWNEEDENDDAAYSDGGTDEGRRLVED
PRADEVTAEIHDEKVNEEELEEIYEFAATQRKKEEKDSEEEEEEDEEKEEEDEVGETVFT
KLTEPKSKKNPQPNFQLEPDRSPDRSYDRLFSAPWGVYEEGEPSSSASAPPETRPPQVQQ
HRAHKPSSELSGGPLLQSSASAVEDLSLSPPPCASSPPVPGRSPGRAGHPDGDEGEDDAE
DEAPLTRESKGPARICVPLSPDSPRTKIEPELIVLSDSSEEAETEVRVDVLSSGTPSPQR
SYTEVKTRQSRTPKEPSSENTVSSSVEFRPAEPPDWSPEVSWLIPSAPVQSRSSRSSSTQ
TKSSMCRTQLFAASPPSSSVFSSPALPFKNMPHVSKSPTGVCAHGVSRLKADSAAALRGS
DPKLSPKKRSNSDREVVDVPPSQPETRPRSLPRSLRASSTEDLHPPPPSYSSTPLHPQLH
RPPGRPAASPLHADRDRHQSQRRERAPSESPEKTELGSFRLSPLSDPSDPPSSSSSPGRH
LQSSRRRSESFGQSRRSVESGGRDTAGLDSTRRGVGKEEGKRDAGCDGKDSGDEEQEEEK
GETGEGEVAECSFRQSFTDEPPIAFNDSWGLDAACVQAGPGCFSPRLEDSGQSSQPERNP
GQPETGRSSSSSIPQPPPQTRRRGATTPPPPEGHVTRPGRTGPSPPDLDSRTTPEINNDL
LDSKIWDSWEEEDEEEALPLSQRVNPSAQLKTPTTSHNKRRRTLVPITPVPHYSDMDTPE
LKNKLNRFGVRPLPKRQMILKLKEIHQYTHQLVSSEEEEEEEAPAAVRAAQTKPPPSRPV
SGAQSAEFKEPRAAAAAAPGKHTGEEEAEPLSNSQGSNTSSTAASEESERSNPELCVSSS
SSDDEDEDAAGISSSQAAHRLRDRLQAVRSFILSDAGLYGQILEYRPLVLSQLQERLRAA
GIRLGAAKLVDYLDSQCITFTTAKPGNSAPGRRRGKRTARAAGGKKGVAALI
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcggaccaggactttgtagatctctgctcgaagctgctgaaacgagtccgc
aagaaaccagaagagcccaaacagccgagcaggaaggcagaacatcatcagcccaccagt
caaccaggcggagacaagaggaggaaaccctgtaaaagagatggggactccgggtcaaag
gtcaccagctctcagcctgttagtgctgcagggagcggacacgagtcgggggacgccggc
tcatctgttgggccttcggcggcggcaggaccgagagctgacgggggtccaaatgcaaaa
gacaaagtgcttctccggatgcaacagttcaagagatccagtccgcgaaggatggtgcac
gaagacaagatccaacccacgaaccaggacgacggcgacgactgccctcctcttgtacag
caacaaacacgagaggctccggactccctcggctcggatcgccccgccgagccgctggac
ggcgacgaggctctcgccctgcggctgcagcaggagctggacagcgaagcggcgcgggtc
cggacggtggacctggaggaccgaggccttttcttctgtcagatctgcagcagagatttg
tcgcacatgacgcctgagggacgcacgcagcacatcaacaggtgtctagatgatagtgag
gagagcgcccctgctcctcttcctcctccgcctcccgcaccctccggtgtcgctgactgt
cccatctgtggcaagaagttcaagtcccagaagagtcgctcggcccacctgaagcgctgc
tcctctgctatgggcatctctccggctgtgctgctgcaggttctgcagagacaggccgag
gagaaccagagcgccgccgccgccgccgccaacacgcacgtacagggcaccaaaaggaaa
ggaccgaccaagccgggcctgcccgcgagcaagaagcccaggaagaagactgagccggtg
gacgaggagaccatggtggctctggctctgtcgtcctccctgctggaacaggagacgcag
cagcagagacagatggaggcgttgaggcggctacaaaccgagacccgcagctccatgact
ctgaatcggagggcagttgcgggtaagggacgtggaaagaggaagaagggcgccgcccct
cgtcctcctccactcctcctctgtcaggatgcccagtcggccctgacgaggctgcaggaa
cgggtttctgctcttctcctgtgcagccgggccccctctcccccgaccccgacccgcagc
cccagcgctctgcctggcaggagcggtgctgcccccctctggcagaaaagcacactgcag
gaccgaggctccaccagcctgtctgatttctatgctccagagatcagagagcttttcatg
gcggtggaatcagtgacgacggacgcagcctcgttccagcccgagtcgtctgtccaaccg
gtgactgaagggactcccgtccccgggaccagcgcctccatcccaccatcctcccccaag
acggcctcctgctccacagctctgtccagccccgggacggggcagctcctggtgggcagc
caggctctccgagacctgatggatctggctgaagacggcatgaccctcacacagtgggga
tacactgccaaagacaagcagtttgaccttcgcctgagcggtttcgtgcaggaggagtcg
gaggagcaggaaaacctctgtgtcagcggcttcttgccagaaacggcccacacacactcc
cgcagccaagcgatgaggacgtctgatcagccaggagcggacggagacagagacagagac
agaggcagaggcagcaaccaatcagtggcgctgtccaggctggcgtcggacctgagcagc
atggtgaacaaccctcagctcagtgacctgcagctccaggtggacgctggagaggtgttc
tttgctcactccttcatggtgtacgctcgctgccccctgctggccgaaatggtgcatgaa
agtggtttcggggtgcaggaggcaggcgcccccgccgctcagagggtgttgcttagcgac
gtcccgggtcaggcagtgctcgctgtgctgcagtacctctacactgccagctgctccatc
ccggcgtcactgcagcctcatgtactggagctggcatccaggtttgacttgcaggagctg
cagcagctttgtcagctccaccgagaggaggcggaccgcaccaaccaggaggagaacagc
agccgaacagaccaggccttcatggagctcctgcagtccatgtggaacgaagaggatgaa
aacgacgacgcggcgtattcggatggaggaacggatgaagggagacgattggtggaggat
cctcgagccgatgaggtcacggcagagattcatgatgaaaaagtgaacgaggaggagctg
gaggagatctacgagtttgccgccacacagagaaagaaggaggagaaagacagcgaggag
gaggaggaggaggacgaagaaaaggaggaggaggacgaagttggagagacggtgttcacg
aaactgacagaacccaaaagcaaaaaaaacccgcagcccaactttcagcttgaaccggac
cgcagcccggatcgcagctacgaccggctcttttcagccccatggggggtctacgaggaa
ggtgagccctcctcctcagcctccgctccgccggagacacgcccacctcaggtccaacag
caccgggctcacaaaccgtcgtctgaactgtcaggcggacctctacttcagtcgtcagca
agtgcagtggaagacctttccctcagccctccgccctgcgcatccagcccgcccgtcccg
ggtcggtcccccgggcgggcggggcacccggatggagacgagggagaagatgatgctgaa
gacgaagcgcctctgacgcgagaaagcaaaggacctgcccgtatttgtgtccctctttct
cccgactcacctcggacaaaaatagaacccgagctcatcgttttgtccgactcgagcgag
gaggcggagacggaggtgcgggtggatgttctcagctccggcactccttcacctcagcgg
agctacacggaggtcaaaaccaggcagagccgaacaccgaaagaaccctcttcggagaac
acggtgtccagcagcgtggagttccgtcccgctgagcccccggactggtctcccgaggtg
tcctggctcatcccgtccgcaccggtccagtccaggagcagcaggtccagctccacgcag
accaaaagcagcatgtgcaggacgcagctgtttgctgcctccccgccctcgtcctccgtt
ttctcctctcccgctttaccgtttaagaacatgcctcacgtctccaaaagtccgaccggc
gtttgtgcccacggcgtctccaggttgaaggcggacagcgcggcggctctccggggctcg
gatcccaaattgtctccgaaaaaacgcagcaactccgacagagaagttgtcgacgttccg
ccgtcgcagccggagacccgtcctcgctccctccctcgctccctccgagcttcctccacg
gaggatctccacccgccgcctccgtcttacagcagcaccccgctgcaccctcagctccac
cggccccccggccgtcccgctgcctcgccgctccacgctgaccgcgaccggcaccagagt
caaagaagagagagggcgccctccgagagccccgaaaagacagagttggggagctttcgt
ctctcccctctgtccgacccgtcggatccgccctcctcctcctcctcccccggccgccat
cttcagagctcacggaggcgcagcgagtccttcggtcagagtcgacgctccgttgagtcc
ggcggtcgtgacaccgcggggcttgattcgacgaggaggggagtcggaaaggaggaaggg
aaaagagacgccggttgtgacggcaaagactcgggtgatgaagagcaggaggaagaaaaa
ggagaaactggagagggagaagtcgcagagtgcagcttccgacagagtttcacggacgaa
cctcccatagcgttcaacgattcgtggggtctcgacgccgcctgcgtacaagccggtccg
ggctgcttcagtccgaggctggaggacagcggacagtccagccagccggagcgcaacccg
ggacaaccggagacaggcaggtcctcctcctcctccatccctcagcctccaccacagact
cgccgcagaggtgcgactaccccgcccccgcccgaaggtcacgtgacacgcccggggcgc
acaggcccgtcaccgcctgacctcgactcacggacaacgccagagatcaacaacgacctc
ctggactccaaaatatgggacagctgggaggaggaggacgaggaggaggctcttcctctc
tctcagagggtgaacccttctgcccagctcaaaacgccgaccacgtcacacaataaaagg
cgacgcaccttggtgcccatcacccccgtcccccactactccgacatggacacgccggag
ctcaagaacaagctcaacagatttggagttcggcctttgccgaagcgccagatgatcctc
aaactgaaggagatccaccagtacacgcaccagctggtcagctcggaggaggaggaggag
gaggaggcaccggctgcggtgcgcgcggctcagacgaagcctcctcccagcaggcccgtc
tccggcgcccagagcgccgagtttaaagagccgagagcggcggcggcggcggcgcccggg
aaacacaccggagaggaggaggcggagccgctgtccaactcgcagggatccaacacctct
tcaaccgccgccagcgaggagtccgagaggtccaacccagagttgtgcgtctcctcctcc
tcctccgacgacgaagacgaagacgccgccggcatctcgtcctctcaggcagcgcaccgc
ctccgggatcgcctgcaggcggtgcgctccttcatcctgtccgacgccgggctgtacggt
cagatcctggagtaccggcctctggtcctgtcgcagctgcaggagcggctgagggcggcc
gggatccgcctcggcgccgccaagctggtggactacctggactctcagtgcatcaccttc
accacagccaagccgggcaactccgcccccggccggcggcgaggtaagaggacggcgaga
gcggcgggcgggaaaaaaggcgtcgcggccctcatttaa
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integrated database retrieval system
