Embiotoca jacksoni (black perch): 138209126
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Entry
138209126 CDS
T10523
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138209126 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eja03019
]
138209126 (patl1)
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138209126 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
138209126 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
138209126
NCBI-ProteinID:
XP_069023602
LinkDB
All DBs
Position
Unknown
AA seq
835 aa
AA seq
DB search
MFRFQSLDEDCTLEEEDEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAGLDDRPEL
GAGLGLGGGRLGGESRLGGSELSPSSRLPPSAARLPPPSSLPPMGFSSPASGLPPSDAED
RAGEGDLAESLARLILEADPAIAGVGAAERPGPSPGSSGSGLSALHGLDQSRILPSSIPH
PTQPHQHPHHPQHQLPPGPSVSGLPPGPPHSSMLSYQQQQHLMRRGTAPMSQMNSHSIWE
NSMGFGPVSVTPGLITHMEQDSPLMSIIKEVGLPKRPPQGRNDEARDLSERVPPPRSSSP
VIGSPPVRAVPIGTPPKQPMSHALNHQIHHPTAVHVRAPVQHRYPPPFPERLSPNTLLNI
ANSPLCRGPFPPGVGPVLSQIQRAQLLNSQVAGFPRGGPAPPLLPGGGGFRPFFGGPPPP
LGHRMGPPPPLGPPNHTAPIRHNTTHLHPQHRRMLTQRMQSRGMDRCRPGGDRRSRDPYS
NLMTQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEHTTKLITP
QVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILY
TVEKMYSLLLEVQDFEKRYVQAPEEDRDALLDTHKTNMVQLCNSLREKDWEDRVSDERCV
MIMSVRKGKRLMSRLLPFLPSPQAAAVVMAIARNLPALAKKDKQDQVLCWLVDPVSAVIQ
SLSSSSLTDLLQELQGSEGQLASVLHNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWT
ELVFSVTRELLSVPSSSLAPPLFTPPNLLSLFSRYVDRQRLELLQDKLQISALTR
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgaagactgtacgttggaggaggaagacgaggggttg
gtagaagaggaagatgaaattgaccagttcaatgacgacaccttcggagccggtgccatc
gacgacgactggcaggaggagcacaagcgcctcgcagggctcgatgaccgtcccgagctc
ggagcggggctggggttgggaggagggcggctgggaggagaatcacgtttaggaggaagc
gagctctcgccctcctcccgtctccctccatccgccgcccgtctcccccctccatcctcc
ctccctccgatgggcttctcctcgcctgcctccggactccctccgtcagacgcggaggac
cgagcaggggaaggtgaccttgccgagtccctggccagactcatcctcgaggccgacccg
gccatcgctggggtcggggcggccgagaggcccggtccgtcccccggctcctcggggtcc
ggcctgtccgctctgcacgggctggaccaatcccgaatcctgccctcctccatcccgcac
cccactcagccacaccagcatccccaccacccgcagcaccagctgcctcccggaccctcc
gtttcaggccttcctcccggccctcctcactcctccatgctcagctaccaacagcagcag
catttgatgcgcagaggcaccgctcccatgagccagatgaactctcacagtatttgggag
aacagtatgggcttcgggccggtcagtgtcacccccggactgatcacacacatggagcag
gacagtcctctgatgtctatcatcaaagaggtgggcctcccaaagcggccccctcagggg
agaaacgacgaggcgcgggatctgtcggagagggttccgcccccacgctcatcctccccc
gtcattggctcgcctccggtgagggcggtgcctatcgggaccccgcccaagcagccgatg
agccacgccctgaatcaccagatccaccatcccacggcggttcacgtgagagccccggtc
cagcacagataccctcctcctttccccgagcgtctatctcccaacaccctcctcaatata
gctaactctccgctgtgtcgcggcccgttccctcctggagtcggcccggttctgtctcag
atacagcgggcccagctgctcaactctcaggtggcaggtttcccccgcggtggccccgcc
cctcctttgctaccaggcggaggaggtttccggcccttcttcgggggcccgcctcctcct
ctcggtcaccgaatgggtccgccgccgcctctcgggccccccaaccacacggcgcccatc
cggcacaacaccacccacctccacccgcagcaccgccgcatgctcacccagcgcatgcag
agccgaggaatggaccggtgcagacccggaggggaccggcgcagcagggacccctacagc
aacctgatgacccaaaaggagaaggagtgggtcaccaagatccagatgatgcagctgcag
agcaccgacccgtacctggacgactactactaccagaactactatgaaaagatggagaaa
cgtcaggaaagagagcgagacagcagcaagaaggagcacaccaccaagctcatcacgcca
caggtcgccaaggtggagcacacctacagaccagttcagttcgccggctctctggggaaa
ctgacggtctccagcgtcaacaatccccgcaagatgatcgacgccgtggtgacgacgagg
accgacgacgaggagaaacgagagaagcaggtttggaataaaaggcgacagatcctctac
actgtggagaagatgtacagcctgctgctggaggtccaggacttcgagaagcgctacgtc
caggcgccggaggaggaccgcgatgctctgctggacacgcacaagaccaacatggtgcag
ctgtgcaactctctgcgggagaaggactgggaagacagagtgagtgatgagcggtgtgtg
atgatcatgtctgtgaggaagggcaagcggctcatgtccagactcctccccttcctgccc
tcgccgcaggcggctgccgttgtcatggcaattgcccgcaaccttcctgccttagccaag
aaggataagcaggaccaggttttgtgctggttagtggatccggtgtctgcagtgattcag
tcgttgtccagctcctccctcacagacttactgcaggagcttcaaggcagcgagggacaa
ctggcctcagtgctgcacaacaagttcggtgtgactctgctgtatctgatcctgagtgaa
ggagagaggatgcaaagctccgaccccaactgtcagctcatggacgacaatcgatggact
gagttggtgttttcggtgacgcgggagctgctcagcgtcccctcctcctccctggctccg
ccccttttcaccccccccaacctgctctccctcttctcgcgctacgtcgataggcagcgg
ctggagctgttacaggacaagttacagatctctgcgctgaccaggtag
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