Embiotoca jacksoni (black perch): 138209144
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Entry
138209144 CDS
T10523
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138209144 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eja03019
]
138209144 (fip1l1b)
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
138209144 (fip1l1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
138209144
NCBI-ProteinID:
XP_069023627
LinkDB
All DBs
Position
Unknown
AA seq
556 aa
AA seq
DB search
MSAEEADKTTTTDASAGDEEEEWLYGDESETKEDDEEAKLNAAVGAPADGSTENAAAHAT
GNGVASEATGEAAGEDVDSDSDSDDDDDDVRVTIGDIKTGAPQYTPYGAPPVNLNIKTTG
SRPYGQVSTKLKGVDLDAAGNINGVPVVEVDMESFEEKPWRKPGADLSDYFNYGFNEDTW
KAYCEKQKRLRMGLEVSTVGSVTSKITVQQGRTGNEKDVSSLAVHTSKPDFTSPVNLYKS
AVSQVTRISPPQWTGPPPQDMSYYTKTSGTIDVIGGQLATISRVEGRRRHNLEGNNIQVI
SEHSTSDTEPTPAKIPTFFPPGPIPPNIPPPPFLPPPPNVSTAPPLIPPPRLPITVPPPG
FPPPPSGPPPAIIPTMDSGHTGGYDGRSVPPYPFPQGAYPPPMAGGVPPPWPPMMENAKP
WEYYPRRDDKRDKDRERPRERTHEREREREHSPSAMSYTSDDERYRYREYQERAYGERHR
DRSSREKEERHRERRHREKEEGRHKSSRSSSSRRRHDSEEGDSHRRHKHKKSKRSKEGKE
ASGEISADQENQEVME
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaagcggacaaaacaaccaccactgatgccagcgctggggatgaggaa
gaggaatggctgtacggagatgagtctgagaccaaagaagacgatgaagaagccaagctg
aacgctgcagtcggtgcacctgctgatggttcaacagaaaatgctgctgcacacgccaca
ggaaatggagtggcctctgaggccacaggtgaagctgccggtgaggacgtggacagtgac
agtgacagtgatgatgacgatgatgacgtccgcgtcaccattggcgatattaaaactgga
gcacctcaatacacgccttatggcgctccacctgtcaaccttaacataaagacaacaggc
tccagaccatacggacaagtgtccacaaagctgaagggagtagatctcgatgcagctgga
aacattaacggtgtcccggtggtggaggtcgacatggagtcctttgaagagaaaccctgg
aggaagccaggagcggacctgtctgactatttcaactacggcttcaatgaagacacgtgg
aaggcctactgtgagaaacagaaaaggctgcgcatgggcctcgaggtctccacagtcggc
tcggttacgagcaagatcactgtgcagcagggcaggacaggtaatgaaaaggacgtgtcc
agtttagctgttcacacctccaagccagactttacatctcccgtcaacctgtacaagtct
gctgtcagtcaggtcaccaggatctctccccctcagtggactggcccgcctcctcaagac
atgtcctactatacgaagacgagcggcaccattgatgtgattggtggacaattggccaca
atcagcagggttgaaggtcgtcgcagacacaatctagagggcaataatattcaggtgatc
tctgaacactcgacgtcagacaccgaaccaactccagctaagatacccaccttcttccct
cctggaccaattcctccaaacatacccccacctccatttctcccaccgccaccaaacgtt
agcaccgcgccccctctcatccccccacccaggctgcccatcactgtccctccccctggt
tttcctcctccacctagcgggcctcctcctgctatcatccccactatggacagcggccac
actggaggttacgatggacgctcggtccctccatacccgtttcctcaaggtgcttaccct
ccaccgatggctggaggtgtgcctcctccttggcccccgatgatggaaaacgccaaaccc
tgggaatactatccccgtcgagacgacaagagagacaaggacagagaaagaccaagagag
aggacacatgagcgggagcgagagagggagcacagcccttcagctatgagctacaccagc
gacgacgagcggtatcgttaccgtgagtaccaggagcgcgcctacggagagcgacatcgc
gaccggtcgagccgagagaaagaggagagacacagagagaggcggcacagagagaaagag
gagggacgccataagtcctctcgcagcagcagtagcagaaggaggcacgacagcgaggag
ggcgacagccaccggaggcacaaacacaagaagagcaagaggagcaaggagggcaaagag
gccagtggggagatcagcgcagaccaagagaaccaggaggtcatggagtag
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