KEGG   Embiotoca jacksoni (black perch): 138209393
Entry
138209393         CDS       T10523                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
eja  Embiotoca jacksoni (black perch)
Pathway
eja03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:eja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    138209393 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:eja03021]
    138209393 (taf5l)
   03036 Chromosome and associated proteins [BR:eja03036]
    138209393 (taf5l)
Transcription machinery [BR:eja03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     138209393 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     138209393 (taf5l)
Chromosome and associated proteins [BR:eja03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     138209393 (taf5l)
    STAGA complex
     138209393 (taf5l)
    TFTC complex
     138209393 (taf5l)
    SAGA complex
     138209393 (taf5l)
    SLIK complex
     138209393 (taf5l)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_TEP1_2nd TFIID_NTD2 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML CFAP251_N Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_Aladin NBCH_WD40 WDR90_beta-prop_4th DSE1_N ANAPC4_WD40 Beta-prop_SCAP PAC11 Beta-prop_RIG_2nd Beta-prop_VPS8 Beta-prop_WDR41 Beta-prop_IFT140_1st Beta-prop_NOL10_N RMC1_N Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_DCAF4 Tricorn_2nd Beta-prop_WDR19_1st Nbas_N ASA1 PEP5_VPS11_N Beta-prop_IP5PC_F WD_LRWD1 PROPPIN TRIP13_N PD40 Beta-prop_ELP1_1st
Other DBs
NCBI-GeneID: 138209393
NCBI-ProteinID: XP_069024045
LinkDB
Position
Unknown
AA seq 599 aa
MKRVRTEQIQYAVAQYLKRRQHVDTDGSLKGAKLFQSAEEMAASLTVQTESGCSNVVSAS
PCQSDSHQYEVQFSRLRSFLSEADISWAEEVSGILYPLFVYLHLDMVRCGPKGAVDGFYT
RFHGDFLQDGERRATVEQLRHVVTAQDVAANPELSAFLEHKYVVHLAEPAYGYLLRFLQS
EDNGALCRALSAHLQVEVTASRRTDYQLYGTAGGATAAPNSASSWAGVDGGEGGEGVEVP
AGIPQSEVALEALRDCVKKVREGPPSLTTVCFYAFHHTEQMLTGAEVSADSRLLAAGFDS
SAVKLWSLRARKLKARPHRADVSRIHLACDVLEEVDEEDASGSEVKTLRGHSGPVFRTAF
LTDSSGMLSCSEDTTIRYWDLGSFTNTALYRGHVYPVWDVDVSPCSLYFASCSNDRSARL
WTFSRTYPLRLYAGHLSDVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGHRGP
VLSLAFSPNGKYLASAGEDQRVKLWDLASGTLFKDLRGHTDGVSSLSFSPDSSLVASASL
DNSVRVWDVRNSHGGTAADGSSGEMVGLFAGNTSSVLNVQFMACNLLLVTGTAQEKAEP
NT seq 1800 nt   +upstreamnt  +downstreamnt
atgaagcgggtccgtacggagcagatccagtacgctgtggctcagtacctgaagaggagg
caacatgtggacacagacggctcactgaaaggagccaaactgttccagtcagctgaagag
atggcagccagcctcacagtccagactgagtcgggctgttccaacgtggtgtcagcgtct
ccctgccagtctgactcccatcagtatgaggtccagttctccaggctgcgctccttcctc
tcagaagcagacatctcgtgggcggaggaggtgagcggcatcctgtatccgctcttcgtc
tacctccacctggacatggtgcgctgcggcccgaagggggcggtagacggtttctacacc
cgtttccacggcgacttccttcaggacggcgagcggcgcgcgaccgtcgagcagctccgc
cacgttgtcaccgctcaggacgtcgccgccaaccccgagctgagcgccttcctggagcac
aagtacgtggtccacctggcggagccggcctacggctacctgctgcgcttcctgcagagc
gaggacaacggcgccctctgcagggccctcagcgcacacctgcaggtggaggtcaccgcc
tccaggcgcacggactaccagctgtacggcaccgccggcggggcgaccgccgcccccaac
tccgcctcctcgtgggcgggggtggacggaggggagggcggggagggggtggaggtcccc
gccggcatcccgcagagcgaagtggcgctggaggctctgcgggactgcgtgaagaaggtc
cgggagggcccgccctcgctcaccaccgtctgcttctacgccttccaccacacggagcag
atgctgaccggcgccgaggtgtcggccgacagccggctgctcgccgccggcttcgacagc
tccgccgtgaagctgtggagcctccgagcgagaaagctgaaggcgcgaccgcatcgggcc
gacgtgtcgcgcatccacctggcctgtgacgtcctggaggaggtggacgaggaggacgcg
tccggcagcgaggtgaagacgctgcggggtcacagcggcccggtgtttcggaccgccttc
ctgacggacagctccgggatgctgtcctgctccgaggacacgaccatccgctactgggac
ctgggcagcttcaccaacacggctctgtaccgcggccacgtgtacccggtgtgggacgtg
gacgtcagcccctgcagcctctacttcgccagctgctccaacgaccgcagcgctcgcctc
tggaccttctcgcggacctacccgctgcggctctacgccggacacctgtccgacgtcgac
tgcgtcaaattccacccgaactccaactacctggccaccggctccacggacaagaccgtg
cggctgtggagcacccagcagggggcgtcggtgcggctcttcaccggccaccgcggcccg
gtgctatcgctcgcgttctcgcccaacgggaagtacttggcgtccgccggcgaggaccag
cgggtgaagctgtgggacttggcgtcggggacgttgttcaaagacctgcggggacacacg
gacggcgtcagcagtctgtccttcagccccgacagcagcctggtggcgtcggcgtctctg
gacaactcggtgcgcgtgtgggacgtccgcaactcccacggcgggacggcggccgacggc
tcgtccggcgagatggtgggactgttcgccgggaacaccagcagcgtgctcaacgtgcag
ttcatggcctgcaacctgctgctggtcaccggcaccgcccaggagaaggcggagccgtag

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