Embiotoca jacksoni (black perch): 138210208
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Entry
138210208 CDS
T10523
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
eja Embiotoca jacksoni (black perch)
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NCBI-GeneID:
138210208
NCBI-ProteinID:
XP_069025325
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Position
Unknown
AA seq
1588 aa
AA seq
DB search
MSPHLLPSSSSSSSSSFWLMLCFLLGVLLLLSPGVHGQGRLKLTVLSEDRLQMKWKEADG
PVQGYKVRVRPISEVPQPELMLTTTRGRATVAGLDSSQEYSLQVLVLNGTTEKLLAKRRF
TMEGLREEEMIRSGSREQRKKMLPGGSGSGDLDDVTEALQGLPTVLYPQPTTTTAATTTA
EPPAAETPSQLPDETPEKSGKEKRKRKKEKERDRSKVENKEEQGTSQGKPAEEKPRKTAF
TTQPVTGMSPRKPFECDSDAAADIMLLVDGSWSIGRTNFRRVRDFLEGLMTPFNIGPDYI
QIGLTQYSGDPRTEWQLNNFTTKDQLLEAVRNFRYKGGNTFTGQALLHVMEENMRPEAGS
RSDTPFFLVLLTDGKSQDDAIAAANRLKSAGVEIIAVGVKNADEAELRQVASEPVDLNVY
NVNDFPLLSKLVARLVHILCGRIKDRGITKRMEPGPTADPALSYPSPTDLRFSELGSREV
KLHWTNPAVPVQQYRVVYHSAEGQSPQEAVLPGSESTVLLDGLSSQTLYHVSIFPVYEHS
VGLALRGTVTTLPLAMPADLEVTPSSYSSLRVSWDAATGATQYMILYSALSHGEPDDAKE
EKFGAEQTVVELAGLLPATDYSVTLYALYDEDPSDPVTAVATTFDLPPPVSVQFPMVTHS
VLRVSWVPGAVDVTGHRITYSTNHGSDVKQVEVTGLNSVLVQNLSSLSRYLVSVQSHYPQ
GLSAALTSNITTLKVPSPSDLRVTNFSGSDITVRWEAAADDVVSYLIKWISLSGGDLSQL
RVSGDSEGAILEGVQDDKEYQISLSALYGDGAQSEAVAIRYSTLAGGGPSSVTVSEETAV
GLVVSWVPPNAHVLQYRVSYTALTGAETQDSTVLVPGGERQVELESLQPDTRYSILVTAE
YRNREGGSGSAQGKTTSLRVSSVSVVRSDHSSICVSWRPVSAVDGYRIIVQSVEDKQTQQ
EVVDESSSSHCFLHLEAETLYRISVHSLLGSAEGAAVSILHPTATAPARIPIHPRLYPIH
NEVCPEVTIRNSIVKGFDMMEAFGLTRRAHSSVEGVAAEPFVFNTVPTYTLYRDVQLTQS
TKFIHPAGFSPEHTISVAFRLLQDSPKEPFALWQLTDNDFQPKMGVVIDPATKHLLYFSL
DYRGEVQELTFDQPEVRRLFYGSFHKVHLSVSQVGVSLSVDCQRVGERPARPLGNLPTDG
FEMLGKLVKTRGPNSGSAPFQLQSFEIVCNTTWASEDTCCDLPGVRDEESCPAPAYTCTC
SSDIPGAPGSPGPNGKPGPRGEKGEKGEQGHKGEVGPPGKAGFEGGLGSVGSAGPRGITM
QGKVGPPGARGEKGEPGRPGVQGSPGPPGPKGGEGIPGPKGIRGLEGNIGPPGLTGPRGF
QGMPGYPGPLGERGPSGPAGPTGLPGNKGERGEKGEPQSMAMIYQLVSEACGQLVHKEVL
KLDMFINEISRKPAPIEEPVGPPGEPGVSGPKGPPGDRGNQGDVGTRGRPGRGGYPGEQG
RRGTAGGKGDAGTNVQGPSGVKGFAGPPGESELGLPGSKGDDGKPGPPGAPGPPGQPGEI
GPPGVCDSSGGCRGVPQETEDPFYGYQP
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcctcacctccttccttcatcatcatcatcatcatcatcgtctttctggctcatg
ctgtgtttcctgctcggtgtcctcctgctgctgtccccgggggtccacggccaaggtcgt
ctgaagctgacagtcctgtctgaagacagactgcagatgaaatggaaggaggctgacgga
cccgttcagggctacaaggtccgagtgagaccgatctcagaggtgccgcagccggagctg
atgctgaccaccacccggggccgggcaacggtggcaggactggactccagtcaggaatat
tccctccaagtcctcgtcctcaatggaaccacagagaaacttctcgcaaagagacgattc
accatggagggtctgcgggaggaggagatgatccgcagcggcagccgggagcagaggaag
aagatgttgcccggcgggtcggggtcgggagacctggacgatgtaacagaggctctgcag
ggtctgccaacggttctgtatccacagcccacgaccaccaccgctgctacaacgaccgca
gagcccccggctgcagaaaccccctctcaactcccagacgagaccccggagaaaagcggc
aaagagaagaggaagaggaagaaggaaaaagagcgggatcgttcaaaggtggagaacaag
gaggagcaggggacctcacagggaaaaccggccgaggagaaaccccggaagacggctttc
accactcagcccgttacaggtatgtctccaaggaaaccatttgagtgtgacagcgatgca
gcggcagacatcatgttgttggtggacggctcgtggagcatcggacgcaccaacttcaga
cgggtcagagacttcttggagggcctgatgacgcccttcaacatcgggccggattacatt
cagatcggtctgacccagtacagtggagacccccgcacagagtggcagctcaacaacttc
accaccaaagaccagctgttggaggcagtgaggaacttcagatacaagggaggaaacaca
ttcacaggtcaggcactgctccacgtcatggaggagaacatgaggccggaggcgggttcc
aggtcagacacaccatttttcctggtcttgttgactgatggaaaatctcaggatgacgcc
atcgccgctgcaaaccggctgaagagtgcaggcgtggaaatcatcgccgtaggtgtgaag
aatgccgacgaagccgagttgagacaagtggcgtcggagccggtggatctgaacgtgtac
aatgtcaatgacttccctctgctcagcaagctggtggcccgactggtccacatcctgtgt
gggaggatcaaggaccggggcatcacaaaacggatggagcccgggcccacagctgacccg
gccctgtcctaccccagtccgactgatctccggttttctgaactcggttccagagaggtg
aagcttcactggaccaatcctgccgtgccggtccaacagtacagagtggtttaccacagc
gcagagggtcagagtccacaggaggcggtgctgcccggctcagagtccacagtgctgctg
gacggcctgtcctctcagacgctgtaccacgtgtccatcttccccgtgtatgaacactcc
gtcggcctcgcactcagaggaaccgtcaccacactgcccctggccatgcctgcagacctg
gaggtgactccttcctcttacagctcgctgcgagtgagttgggatgcagcgaccggtgca
acacagtacatgatcctgtactcggcactcagccacggggagcctgacgacgccaaggag
gagaagttcggtgcggagcagacggtggtggagctggccggtttactgccggccacggac
tactccgtcactctgtacgccctctatgatgaagatcccagcgaccctgtcactgctgtg
gccaccacattcgatctcccaccaccggtgagcgttcagttcccgatggtcacccacagt
gtgctgagggtgagctgggtgcccggcgccgtggacgtcaccggccacaggatcacttac
agcaccaaccacggcagcgacgtcaagcaggtggaggtaaccgggctgaactcggtgctg
gtgcagaacctgtcctctctatccagatacctggtttcagtccagtcccattacccacaa
ggcctttctgcagcactcaccagtaacatcaccacactgaaggtgccgtctccgtcggac
ctgagggtgaccaacttctcgggcagtgacatcaccgtgcgctgggaggctgcggcggat
gatgtcgtctcttacctcatcaagtggatctctctgagcggaggagacctgagtcagctg
agggtgagcggtgacagcgaaggggcgatcctggagggggtgcaggacgataaggagtac
cagatctctctgtctgctctttatggagatggagctcagagtgaagctgtggccatacga
tacagcaccttggcaggtggaggcccgtccagtgtgacggtttctgaagagaccgcggtc
ggcctggtggtcagctgggttcctcctaacgctcacgtcctccagtaccgcgtgtcctac
accgcactgaccggagctgagacccaggacagcaccgtgttggtgcccggtggtgagagg
caggtggagctcgagtcgttacagccagatacacgttacagcatcctggtcaccgccgag
taccgcaacagagaaggaggcagcggatcagctcagggcaaaaccaccagtctgagggtg
agcagcgtgagcgtggtccggtccgaccactccagcatctgcgtgtcgtggagacccgtg
tccgccgtcgacgggtatcgtatcatcgtccagtccgttgaagacaagcaaacccagcag
gaagttgtggatgagtccagcagcagtcattgtttcctccacctggaagcagagactctg
tatcgcatcagcgtgcactccctcctggggtcagcagagggcgccgccgtgtctatcctc
catcctacagccacagctccagccaggattcccatccatccccggctctaccccatccac
aacgaagtctgtcctgaagtcaccatcagaaacagcatcgttaaaggctttgacatgatg
gaggcgttcggtctgacccggagagctcactcctcggtggagggcgtagcggccgagccg
ttcgtcttcaacaccgtccccacctacacgctgtaccgggacgtccagctgacacagagc
accaagtttatccaccctgcaggtttctctccagagcacaccatcagcgtggccttccgc
ctgctgcaggactcgccgaaggagcccttcgctctgtggcagctcaccgacaacgacttc
cagcccaagatgggagtggtgattgaccccgccaccaaacacctgctttacttcagtctg
gactacagaggagaggtgcaggagctcaccttcgaccagccggaggtccgccggctcttc
tacggcagctttcacaaggttcacctgtctgtcagccaggtgggcgtgtccctgtctgtg
gactgccagcgtgtgggcgagaggccggcccgtcccctaggcaacctgccgaccgatggg
ttcgagatgctggggaagctggtgaagacccgtggacccaacagtggatcggccccgttc
cagctgcagtcctttgagatcgtctgtaacaccacgtgggcttcagaggacacctgctgt
gacctgcctggagtgagagacgaggaaagctgccccgcccccgcctacacctgcacctgt
tcctccgacatccccggggctcccggttcccccggaccgaacgggaagccgggtcctcgt
ggtgagaaaggagagaagggagagcaaggtcacaagggggaggtgggtcctccaggaaag
gctggatttgagggaggcctcggctctgtgggcagcgcgggaccccgaggcatcacgatg
cagggcaaagtgggtcctccaggagcgagaggagaaaagggagagcccggacgacccgga
gttcagggttcaccgggacctccaggtccgaaggggggggaggggatcccaggacccaag
ggcatcaggggcctcgaggggaacatcggtccaccgggcctcaccggacccagaggtttc
caaggaatgccgggatacccgggaccgctgggggagaggggcccctcaggaccggctgga
cctacgggtctgccggggaataaaggggagcgaggagaaaagggggagcctcagtctatg
gccatgatctaccagctggtgtcggaggcctgtgggcagctcgtccacaaggaggtgttg
aagctcgacatgttcattaacgagataagtcgtaagccggctcctattgaggagcccgtg
gggccccccggggagcccggtgtatcggggcccaagggcccaccgggcgaccggggcaac
cagggcgacgtcggcaccagagggagacccggccgggggggatatcctggagaacaggga
aggagagggacggccggggggaagggggacgcgggcaccaacgttcaggggccctcgggc
gtcaaaggatttgcaggtcctccaggtgagtccgagctgggactcccagggtccaaagga
gacgatggtaaaccgggcccgccgggagcccccggacctccgggtcagccaggcgagatc
ggaccaccgggtgtgtgtgacagcagcggaggctgccggggagttcctcaggaaacagaa
gaccctttttacggctaccagccctga
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