Embiotoca jacksoni (black perch): 138210661
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Entry
138210661 CDS
T10523
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138210661 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eja03019
]
138210661 (mtrex)
03041 Spliceosome [BR:
eja03041
]
138210661 (mtrex)
03009 Ribosome biogenesis [BR:
eja03009
]
138210661 (mtrex)
03016 Transfer RNA biogenesis [BR:
eja03016
]
138210661 (mtrex)
Enzymes [BR:
eja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138210661 (mtrex)
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
138210661 (mtrex)
Spliceosome [BR:
eja03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
138210661 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
138210661 (mtrex)
Ribosome biogenesis [BR:
eja03009
]
Eukaryotic type
Pre-60S particles
Helicases
138210661 (mtrex)
Transfer RNA biogenesis [BR:
eja03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
138210661 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
138210661
NCBI-ProteinID:
XP_069026043
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTTTSKKIPACAPTDTGKAAGKNGTDKEPDLCARAKREADSDG
GEEVVFGKRPRLEAVSANDLNLAEFMPQVKVEQVETVEGCSHEVALQANDEYKPLKPRVG
KAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVV
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDTGGSGGGKWDPRGRK
GTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDEEKRLVEEVFNN
AVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTSARKFDGKSHRFITSGEYIQMSGRAGRRGMDDRGIVIFMADEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKIK
KLEEQYHTIEIPNEEGVVTYFKIRQQLAKLGKEIQEFVHKPKYCLPFLQPGRLVKVKNED
ADFGWGVVVNFCKKSNVKASTDSEPLYVVEVLVHCSKDSVKDAATEAAKPAAPGETGEMQ
VVPVMLHLLTAISSVRLYIPKDLRSFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIKD
PALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKAQIAADVRTAKRELKKARTVLQ
MDKLKCRKRVLRRLGFASPSDVIEVKGRVACEISSADELLLTEMVFNGLFNDLTVEQATA
LLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLM
DVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgggttgttcagcgtgtttgacgatgaacagcaaactact
acgagcaaaaaaatacccgcgtgtgcgcctacagacacagggaaagctgcgggtaaaaat
ggcaccgacaaggagcccgacctgtgtgcccgggccaagagggaggcggacagtgacgga
ggggaggaggtggtgtttgggaagagacctcgacttgaggcagtctcagctaacgaccta
aaccttgcagaatttatgcctcaagtgaaggtggagcaagtcgaaactgtggaaggatgc
tcacatgaggtcgctctgcaagcaaatgatgaatataaaccactgaaacctcgagtgggg
aaagcagccaaggagtacccctttattctcgatcccttccagcgtgaggccatcttatgt
attgacaacaatcagtctgtacttgtgtctgcacacacctctgctggcaagactgtttgt
gctgagtatgccattgcactggctctcagagagaagcagcgagtgatcttcaccagcccc
atcaaggccctctccaaccagaagtacagagagatgtacgaagagttccaggatgtggga
ctgatgaccggtgatgtcaccatcaaccccaccgcttcctgcctcgtcatgacgacagag
atcttgaggagcatgctgtaccggggctctgagatcatgagggaagtagcgtgggtcgtc
tttgacgagatccactacatgagagacgcagagcgtggtgtggtgtgggaggagaccatc
attcttcttcctgacaatgtgcattacgtcttcctgtcagccaccatccccaatgccaaa
cagtttgcagagtggatttgccacttacataagcagccatgccatgtggtctacacagac
taccgccccactccgctgcaacactacatctttccagcagggggtgatggactccacctg
gtggttgatgagaatggagatttcagagaagacaatttcaacacagccatgcaggtgctg
agagatgctggcgatactgggggcagtggaggtggcaagtgggacccaagaggacggaaa
gggactaaaggtccatccagtgtgttcaagatagtgaagatgatcatggagaggaacttc
cagcctgtcatcattttcagcttcagcaagaaggagtgcgaggcctacgctctgcaggtg
gccaaactggactttaacacggatgaagagaaacgtctcgtggaggaagtgttcaacaac
gcagtggactgtctctccgatgaagacaagaaactgcctcaagtcgaacatgtgctgccg
ctgttgaagagggggataggaatccatcacggaggcctcctgcccatcctgaaagagacc
atagagatccttttctctgaaggcctgctcaaggccctgtttgctacagagacattcgcc
atgggcatcaacatgccggctcggaccgtgctcttcaccagtgcacgcaagtttgatggc
aagagtcaccgctttattacatcgggtgagtacatccagatgtctgggcgtgctgggagg
agaggaatggatgacagaggaatcgttattttcatggcggacgagaagatgagtccagct
gtgggcaaacagctcctcaagggctcagccgacccgttgaacagtgccttccacctgacc
tacaacatggtgctcaacctgctgcgcgtggaggagatcaacccagaatacatgctggag
aagtctttctaccagttccaacactacagggctttacctggtgtagtggagaaaattaag
aagttggaggagcagtaccacaccatcgagatccccaacgaagagggcgtggtcacttac
tttaaaatccggcagcagctggccaaactggggaaagagatacaagagttcgtccacaaa
cccaaatactgcttgcccttcctgcagcccggacgactggtcaaggtgaagaatgaagac
gctgacttcggctggggagttgttgtaaacttttgcaagaaatcaaacgtgaaggccagt
acagactcggagccactgtatgtggtggaggttttggtccactgtagtaaggacagcgtg
aaagacgccgcgacggaggctgctaaacctgccgctccgggagagactggagagatgcag
gtggttcctgtgatgctccacctcctcaccgccatcagctcagttcgtctctacattccc
aaagacctgaggtcctttgacaacaggcagctcatgctcaagtccatacaggaggtgcag
aaacgcttcccggacggggttcctctgctcgatcccatagatgacatgggcatcaaagac
cctgcactgaagaaggttattcagaaggtggaggccttcgagcaccgcatgtactcccac
ccgctgcacagtgaccccaacttggagtctgtctactcgctctgtgagaagaaagctcag
atcgcagcagacgttcgaacagccaaacgagagctgaagaaagctcggaccgtcctgcag
atggacaagctgaagtgcaggaagagagttctacgaagactcggcttcgccagtccctct
gatgttatcgaggtgaaagggcgggttgcctgtgaaattagcagtgccgacgagctcttg
ctgacggagatggtgttcaacggtctcttcaacgacctgacggtggaacaagccaccgcc
ctgctgtcctgctttgtcttccaggagaatgccagtgagatgccaaaactaaccgaacag
ctcgctgcaccgctgagacaaatgcaggaatgtgcgaagcgcattgccaaggtgtctgca
gacgccaagctggaggtggacgaggagacgtatctgaaccagttcaaaccccacctgatg
gacgtggtgtacgcctgggccaacggagccacgttcgctcagatctgcaagatgaccgac
gtctttgaagggagcatcatccgctgcatgcgccgtctggaggaggtgctgcgacaaatg
tgttctgcagccaaagccatcggcaacactgagctggagaacaagttcgctgaaggaata
acaaagatcaagagagacatcgtctttgctgccagtctctacttatag
DBGET
integrated database retrieval system
