Embiotoca jacksoni (black perch): 138210923
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Entry
138210923 CDS
T10523
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
eja Embiotoca jacksoni (black perch)
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
eja00536
]
138210923
Glycosaminoglycan binding proteins [BR:
eja00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138210923
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138210923
NCBI-ProteinID:
XP_069026460
LinkDB
All DBs
Position
Unknown
AA seq
698 aa
AA seq
DB search
MEIAEARGASKCVEKMEKEEAHQKRQYCRTTALNIISSLCSVASIAFCILLSINTADIKD
RVVDLESGKGEHTFIHATGYSVDDLNSVIQERVDELLSQRSYENFVKIRTARQTSPECNC
PPGPPGKRGRRGRNGEPGPPGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGTLGETGPMGPEGPQG
SKGSLGPPGIAGVDGLKGDVGISGLDGVAGAKGEMGEGGEKGDIGEEGPKGDMGEKGDAG
SSAAGIKGEPGEPGRSGLKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGEKGD
FGPPGKGDRGEIGPVGPKGSQGEAGTPGPKGPKGETGDKGDLGFAGPRGPPGQKGDQGAT
EIIDYNGNIQEALQKITTITVTGPPGPPGPLGPEGIKGDRGMPGLPGLDGERGYKGSKGD
MGMPGASGEKGTTGLPGLPGVNGVKGDKGDSGLPGPQGPSITGSPGSSGPHGPPGPMGPH
GFPGPKGEPGLHGAKGIRGEAGHKGDRGPLGLPGASGLDGKPGIRGMDGPSGPAGPAGPK
GDIGERGASGEPGPRGPYGLPGSAGTPGLDGLPGLRGEKGDDGERGEKGEKGKKGKKGPK
GEKGEQGAPGLDAPCPLGPDGLPMPGCWQKGVTPWLVA
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgcggaggcaagaggagcatctaagtgcgtggaaaaaatggagaaagaagag
gcgcatcagaagcgacaatattgtcgcacaacagcgctgaacataatctcatctttatgt
tcagtggcgtccatcgcattttgcatccttctgagcattaacaccgctgatatcaaggac
cgagttgtggatttggagagtgggaaaggcgagcacaccttcatccatgccaccggctac
tctgtggatgatttgaattcagtaattcaagaaagagtggatgagctgctctctcagcgc
tcctatgagaattttgtgaagattcggacagccagacaaacgtcacctgaatgcaactgc
cctccaggacctccgggaaagcgaggaagaagaggccgcaacggagaacctggacctcct
ggtcctcctggtccaaagggtgaaaagggggatcaaggcgaccagggacctcggatggtc
ttccctaagatcaatcatggctttctttccgctgaccagcagctcataaagcgacggctc
attaagggagatcaaggtcaagcaggacctccggggccaccggggccaccgggccctcct
ggaccaagggggcctccaggggacactggcaaggatggacccagaggtgtgcctggtcta
ccaggtgatccagggacgcttggagaaacaggacccatgggacctgaggggccacaaggg
tcgaagggttcactcgggcctcctggcatcgcaggtgttgacggactgaagggggatgtt
ggcatctcaggattggacggtgtcgcaggagccaagggtgaaatgggagagggaggtgaa
aagggtgatattggtgaagaaggcccaaaaggtgatatgggagagaagggagatgcgggc
tcctcggcagcaggcattaagggtgaacctggagagcctggacgaagtggactaaaggga
gagccaggacttccagggctgcctggactcccagggataaagggtgagcctggattcctc
ggcccccagggagagccagggcttccaggactcccaggaactaagggtgagaaaggtgac
ttcggaccaccagggaagggtgaccgaggagaaattggacctgtcggaccaaagggttca
caaggagaagctggtacacctggtcctaaagggccaaagggggagactggagataaagga
gacttggggtttgctggcccaaggggcccacccgggcagaaaggagaccaaggagccact
gaaatcattgactacaatggcaacattcaggaggctttacagaagattaccactattaca
gtcacgggtcctccagggcctcctgggccacttggaccagagggcattaagggggatcgt
ggtatgcctggtcttcctggacttgatggagaaagaggctataaaggttctaaaggagac
atgggaatgcctggagcttcaggcgagaaaggaacaactggtttacctggtttacctggt
gtcaatggtgtaaaaggggacaaaggagattcaggactacctggtcctcaaggtccatct
attaccggctccccagggtcatcagggccccatggacccccgggacctatgggacctcat
ggcttccctggaccaaagggtgaacctggtttgcatggtgcgaagggtataagaggggaa
gcaggacacaaaggggaccgtggaccattgggtctccctggagcctccggcttggacggc
aagcccggaattaggggcatggacgggccttcaggtccagctgggccagctgggccgaag
ggtgacataggtgagagaggagcatctggcgagccaggaccaagaggaccttatggactt
cctggatctgctggaacaccaggcttggatgggttgccaggcttaaggggagagaaaggc
gacgatggggaaagaggagaaaagggggagaagggaaagaagggcaaaaaagggcctaag
ggcgagaaaggagaacagggtgccccaggattagatgcaccctgcccattgggccccgat
ggattacctatgcctggatgctggcagaagggagtcacaccgtggctggtagcctga
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