Embiotoca jacksoni (black perch): 138211441
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Entry
138211441 CDS
T10523
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03013
Nucleocytoplasmic transport
eja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138211441 (upf3b)
03015 mRNA surveillance pathway
138211441 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eja03019
]
138211441 (upf3b)
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138211441 (upf3b)
mRNA cycle factors
P-body specific factors
138211441 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
138211441
NCBI-ProteinID:
XP_069027434
LinkDB
All DBs
Position
Unknown
AA seq
460 aa
AA seq
DB search
MKEDKENTRPKEKKLEINCEDGEKTEKSKEKKEAMTKIVIRRLPPSLTKEELEEQLQPLP
EVDYLEFFSNDTSMYPHLFARAYINFKNQDDIVLFRDRFDGYVFIDNRGQEYPAIVEFAP
FQKTAKKRSKKKDAKCGTIAEDPDYKKFLEYYNGDDEKFTSTPETLLEELEAKSKELVAK
KTTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEERRKRKEAEKMKRLEK
PLDKDKDQVKEEPKIKLLKKPDRGDDADSEKPKEKPKKPEKPNKEDRSAGNADHKRRLNI
ENKEDRGRKGDEDGRKEFRERDADRDRDREREREKERRQREKDRIRRQDEDRRRRRERKD
GENSCRKREEEVKKERALEKRGENMGDSSHSERPEKSAKDNKKEDSSKRERLRNKDRPAI
QLYQPGARSRNRVPGGGTESNSADRKPDTETKKVAEKGDD
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaagaaaacactcgaccgaaggagaaaaagctggagataaactgtgaa
gatggagaaaagacggagaagtcgaaggaaaagaaggaggccatgacaaagattgtgatc
agacgattaccaccaagtctgactaaggaggagctggaggagcagctgcagcctctccca
gaggtggactacctggagtttttctccaatgacaccagcatgtaccctcacctcttcgca
agggcttacatcaatttcaagaaccaagacgacatagtcctcttcagagaccgatttgat
ggatatgtattcattgacaacagaggtcaggagtatcctgccattgtggagtttgcacct
tttcaaaagactgccaagaagaggagtaagaaaaaggatgcaaagtgtggaacgattgct
gaagatcctgattacaagaagttccttgagtattacaacggagacgatgagaagttcact
tccacgcctgaaaccctgctggaagagcttgaggccaaatcaaaggaactcgtagcgaaa
aaaacaactcctctgctggacttcctgaagaacaaacagagaatccgtgaggaaaagaaa
gaggagagaaggaggagggaactcgagcgcaagcgactgcgtgacgaggagcgtcgtaag
tggagggaagaggagaggaggaagcgcaaagaggcagagaagatgaaaagacttgagaaa
ccactggataaagacaaggaccaagttaaagaagaaccaaaaattaagctcctgaagaaa
ccagacagaggcgacgatgctgattctgagaaacccaaggaaaagcccaagaaaccagag
aaaccaaataaagaggacagatccgcggggaacgctgatcataagaggcgtctgaacatt
gagaacaaggaggatcgaggaaggaaaggcgacgaagacgggcggaaggagttcagggag
cgcgacgcggatcgagacagagaccgcgaacgagagcgggagaaggagcggcggcagaga
gagaaggatcgcatcaggcggcaggacgaggaccggcggaggaggagagagcggaaggat
ggagagaactcgtgcaggaagcgggaggaggaggtcaaaaaagagagagccttggagaag
aggggcgaaaacatgggggactcgtctcactcggagaggccagagaaatctgccaaagac
aacaaaaaggaagacagcagtaaaagagagcggctacgtaacaaggaccggcctgctatt
cagctgtatcagccaggggccaggagccgcaacagagtccccggaggaggaaccgagtcc
aactctgccgacaggaaaccagataccgagaccaagaaagtggcagagaaaggagacgac
tga
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