Embiotoca jacksoni (black perch): 138212462
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Entry
138212462 CDS
T10523
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138212462 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eja03019
]
138212462 (cnot1)
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138212462 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138212462 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
138212462
NCBI-ProteinID:
XP_069028945
LinkDB
All DBs
Position
Unknown
AA seq
2498 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAVDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTIMESSLAEFIQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDSSQAHTWNVEVLIDIVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLNIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMNPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDPLTGMGSL
NLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLSSQLPGMD
SGPLGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSGIGSSI
GSGIGSGMGSGIGSGIGSGIGSGIGSGISSGIGSGIGSGIGSGIGSGIGSGIGSGISSGI
GSSLGMPTVSADPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDEANSYFQRI
YNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITAC
LFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNRLKDYPQYCQHL
ASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLALAQVQAQAQSQQPAGL
KAPQPGQPSTLVTTATTTTTVAKTTTITRPTPSTFKKDVPPSINTTNIDTLLVATDQTER
IVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHS
LYSNFLDTLKNPDFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKN
KPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNPWTMAIMNVLA
ELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLKSLEEQLSAPKKEAKPPE
ELLPVSTTGDFVPFAAPPSTPAATTTACTTTGPPTPQFSYHDINVYALAGLAPHININVN
ISLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDSEESRMRV
AAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDN
CELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRL
KVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYDKCMAD
LEQHLHAIPPPLAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAVEGLLDATSGADA
DLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVN
MQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHTIETLMRTCAHS
RANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLRE
WVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQ
HNPAASVAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDH
DVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAW
LELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRV
LLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEI
NIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINAL
VLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPN
SHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFW
SHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7497 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctctgttacgctgttgacaatcccctgcac
taccagaagagtttgaagccatcggcccacttattcactcaactgagtaaagttcttaag
ctcagcaaggtccaagaggtgatatttggcctcgctttgctcaactccagcaacgcagac
cttcgtggttttgccgcacagttcatcaagcagaaacttccggacctcctgcggtcgtac
gttgacgcggatctcggaggaaaccaggaaggtggcttccaagacatcgccatagaggtg
ttgcacctgctgctctcccatctactgttcggacagaagggagcaagtggggttgggcaa
gagcagatcgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggataggatccta
ccagactcgggggagttagctaagaccataatggagagttctctcgcagaattcattcaa
gaagttggctatggcttctgtgcaagtctggacgagtgcagaaacataatcctccagtat
ggggtgagagaggtgacagctagccaggtggcccgagtcctgggcatgatggctcgtacc
cactctgggctcaccgacggcatcccactgcagtccatctctgctccaggaagtggtatc
tggagtgacgggaaggataagaacgatagttcgcaggcacatacgtggaacgtcgaggtg
ctcatcgacatcgtcaaagaagtgaatcccaacctgaacttcaaagaggtgacatacgaa
ctggaccaccctggatttataatccgggacagcaaagggctgaatatcgtggtgtacggt
atccagagggggctgggcatggaagtcttccctgtagatctcatctatcggccgtggaaa
catgcagagggacagttgtcattcattcagcactctctgatgaacccagaggtgttctgc
tttgctgactacccctgtcacactgtcgccattgacatcctgaaggctccaccagaggat
gacaacagggagatcgccacatggaaaagcctggacctggtggagagtctgctcaggctg
tctgaggtgggccagtacgagcaggtgaagcagctgttcagcttccccatcaagcactgc
cccgacatgttggtgctggcattactgcagatctccacctcctggcacacgctgcgccac
gagctcatctccaccctaatgcccatctttctgggcaaccaccccaactccgccattatc
cttcactacgcctggcatggacagggacagtctccttccattcgtcagctaattatgcat
tcgatggctgagtggtacatgagaggggagcagtatgaccaggccaaactatcgcgcatc
ttggacgtggcccaggacttgaagtctctatcgatgctgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgccgcgaatacctcaaacttgataaatgg
ctgactgacaaaatcagagaacatggggaacctttcatccaggcatgtgtgacgttcctg
aagagacgctgcccgtccattatggggggtctggcccccgacaaggatcagcccaaaagc
gcccagctgcccccagaaactttagccaccatgctggcctgcttgcagtcctgcgctggg
agtgtgtcccaggagttgtcggagaccatcctgaccatggtcgccaactgcagcaacgta
atgaataaagcccggcagccgccaccaggggtgatgccaaagggacgcgccccgagcacc
agcagcctggacgctatctcacctgtgcagatggaccctctgaccggcatgggttccctg
aacctggggggcacagccacctcccacactcagagcatgcagggtttcccgacctctctg
agttcagctttcagtaatccacagtccccagccaaggccttcccacctctctccaacccc
aaccccagcacgccgttcgggggtatcggcagcctcagctcgcagctccctggtatggac
tctggtcccttgggttcgggcatcggctcgggcatcggctcgggcatcggttccggtatc
ggctctggtatcggctccggtatcggctccggcatcggctccggcatcggctccggcatc
ggctcgggcatcggctcgggtatcggctccggcatcggctccggtatcggctccagcatc
ggctccggtattggctcgggcatgggttccggtattggctcgggcatcggctcgggcatc
ggctcgggcatcggttccggtatcagctcgggcattggctccggtatcggctcgggcatt
ggctcgggcattggctcgggcattggctccggtatcggctccggcatcagctccggcatc
ggctccagtctggggatgccgacagtaagcgctgaccccttcggcaccaggaagatgagc
acacccggcctgaacccgccaacctttcagcagactgacctttctcaggtgtggcccgag
gcaaaccagcactttagtaaggagatagacgacgaagccaacagttacttccagcgcatc
tacaaccacccacctcacccaaccatgtctgtggatgaagttctggagatgctgcagcgg
ttcaaggactccaccatcaaacgggaacgagaggtgttcaactgcatgcttcgcaacttg
ttcgaggaatacaggttcttccctcagtacccggacaaggagctgcacatcaccgcctgc
ctcttcggcggcatcatcgagaagggcctggtcacctacatggccctgggcctggccctc
cgatacgttctcgaagccttaaggaaaccgtatggatccaaaatgtattactttggaatt
gctgccctagataggtttaaaaacagactaaaggactaccctcaatattgtcagcacctt
gcttcaattgctcacttcttgcaattcccccaccatttacaagagtgcgtgcagtatatc
gagtacggccaacagtcacgggaccctccggtgaagatgcagggctccatcaccaccccg
ggcagcctggcgctggcgcaagttcaagcccaggcccagtcgcagcaacccgccggcctc
aaagccccgcagccgggccagcccagcaccctcgtcaccacggcgacgactacaaccaca
gtggccaagacgaccaccatcaccaggccgacacccagcaccttcaagaaggacgtgccg
ccctccataaacacgaccaacatcgacaccctgctggtggccaccgaccaaacggaaagg
atcgtggagcctccggagaacgtccaggagaagatcgctttcatcttcaacaacctctct
cagtccaacatgacacagaaggttgaggagttgaaagagacggtgaaggaggagttcatg
ccctgggtgtctcagtacctggtgatgaagcgtgtcagcattgagcccaacttccacagc
ctctactccaactttctggacacgctcaagaacccggactttgtcaagatggtcctgaat
gaaacttacaggaatatcaaggtgcttttgacctccgacaaggcagctgccaatttctct
gatcgctccctgctgaagaacctgggccactggttgggcatgatcacactggccaagaac
aagcctatcctctatacagacctggaagtgaagtctctgctactggaagcttacgtgaaa
ggccagcaggagctgctctacgtggttccctttgtggccaaagttctggagtctagtctt
cgcagcatggttttcaggccccagaatccgtggaccatggccatcatgaacgtcctggct
gagctgcatcaggaacacgacctcaagttgaatttgaagtttgagattgaagttctgtgt
aagaacttgtcgctggacatcaacgatctgaagccaggaaacctgctgaaggacaaggac
aagctgaagagcctcgaggagcagctgtctgcaccaaagaaggaggcaaaacctccagag
gagctgctgccagtttctaccacaggagacttcgtcccgttcgcggctcctccctccacc
ccggccgcaaccaccaccgcctgcaccaccaccgggccgcccacccctcagttcagttac
catgacatcaacgtgtacgccctagcaggcctggctccgcacatcaacatcaacgtcaac
atctctctgctgcaggctcaccctcagctgaagcagtgcgtgcgtcagtccgtggagcga
gcggtccaggagctggttcaccccgtggtggatcgctccatcaagatcgccatgacgacc
tgcgagcagatcatcaggaaggacttcgccctggattcggaggagtcccgcatgcgcgtg
gccgcccaccacatgatgagaaacctgaccgctggcatggccatgatcacctgccgcgag
ccgctgctcatgagcatcgccaccaacctgaagaacagcttcgccgccgcactgagggct
ccgaccccccagcagagggaaatgatggaggaagctgcagccagaatcgctcaggacaac
tgcgaactggcctgctgcttcattcagaaaactgctgtggagaaggccggccccgagatg
gacaagagactcgccacggagttcgagctgaggaaacacgctcgccaggagggacggcgc
tactgtgatcccgtcgttctgacttatcaggccgaacgcatgccggagcagatcagactc
aaggtgggaggagtggacccgaagcagctggctgtgtacgaggagtttgccaggaacgtt
ccaggtttcttaccaagtaatgatctctcccaacccaccggcttcctggctcagcccatg
aagcaacaggcctgggccacggacgacgtggctcagatctacgataagtgcatggcggat
ctggagcagcacctccatgccatccctccacccctggccatgaaccctctgacccaggcg
ctgcgcagcctgctggaggccgtcgctctggcccgcaactccagggacggcatcgccgct
ctcggcctgctgcagaaggctgtggaaggtctcctggatgctaccagcggggctgacgcc
gacctgctgcttcggtacagagagtgccacctgctggtgctgaaagctctgcaggacgga
cgtgcctacggacctcagtggtgcaataagcagatcaccaggtgtttgatcgaatgccgc
gacgaatacaaatacaacgtggaggccgtggagcttctgatcaggaaccatctggtgaac
atgcagcagtacgacctgcacctggcgcagtcgatggagaacgggctgcactacatggcg
gtcgccttcgccatgcagctggtgaagctgctgctggtggacgagcgcagcgtgagccac
gtcaccgaggccgacctcttccacaccatcgagactttgatgagaacctgcgcacactcc
agagccaacgcacctgaggggcttccccagctgatggacgtcgttcgctccaactacgaa
gccatgatcgaccgggcccacggcggacccaacttcatgatgcactctgggatctcgcag
gcgtctgagtacgacgaccccccgggcctgagggagaaggccgagtacctgctgagggag
tgggtcaacctgtatcactcggctgccgccggccgggacagcaccaaagcattctccgcc
ttcgtcggccagatgcaccagcaaggcatcctgaagacggacgacctgatcacgcgcttc
ttccggctgtgcacggagatgtgcgtggagatcagctaccgggctcaggccgagcagcag
cacaacccggcagccagcgtcgccatcatccgagccaagtgctaccacaacctggacgcc
ttcgtgaggctcatcgccctgctggtcaaacactcgggggaggccaccaacacggtgacc
aaaatcaacctcctcaacaaggtgctgggcatcgtggtcggggtgctgatccaggaccac
gacgtccgtcagacggagttccagcagctgccgtaccaccgcatcttcatcatgctgctg
ctggagctcaacgcccccgagcacgtcctggagaccatcaacttccagacgctcaccgcc
ttctgcaacaccttccacatcctgagacccaccaaagcacccggctttgtgtacgcctgg
ctggagctcatttcccaccgcatcttcatcgccaggatgctggcgcacacaccgcagcag
aagggttggcccatgtacgcacagctgctgatcgatctcttcaagtacctggcgccgttc
ctgaggaatgtagagctcaacaaacctatgcaaatactctacaagggcacactgcgggtg
ctgctggtgctgctgcacgacttccccgagttcctgtgcgactaccattacggcttctgc
gacgtcatcccgcccaactgcatccagctgcgcaacctcatcctcagtgccttcccgcgc
aacatgaggctccccgacccgttcacgcccaacctgaaggtggacatgctgagtgagatc
aacatcgctccccggatcctcaccaacttcaccggcgtcatgccctcccagttcaagaag
gatctggactcgtatctgaagacgcgctcgcctgtcaccttcctgtcggagctgcgcagc
aacctgcaggtatccaacgaaccgggaaaccgctacaacatccagctgatcaacgcgctg
gtgttgtacgtgggcacgcaggcgatcgctcacatccacaacaagggcagcaccccctct
atgagcaccatcacccactctgcacacatggacatcttccagaacctggccgtggacctg
gacaccgagggacgttacttgttcttgaacgccatcgccaaccagctgcgctaccccaac
agccacacccactacttcagctgcaccatgctctacctgttcgccgaggccaacaccgag
gccatccaggagcagatcaccagggttctgctggagcggctgatcgtgaaccggccgcat
ccgtgggggctcctcatcaccttcatcgagctgatcaagaatcctgccttcaagttctgg
agccacgacttcgtgcactgcgcccccgagattgaaaagctgttccagtccgtggcccag
tgctgcatgggacagaagcaggcccagcaggtgatggagggcaccggtgccagctag
DBGET
integrated database retrieval system
