KEGG   Embiotoca jacksoni (black perch): 138212622
Entry
138212622         CDS       T10523                                 
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
  KO
K06237  collagen type IV alpha
Organism
eja  Embiotoca jacksoni (black perch)
Pathway
eja04382  Cornified envelope formation
eja04510  Focal adhesion
eja04512  ECM-receptor interaction
eja04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:eja00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    138212622 (col4a4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    138212622 (col4a4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    138212622 (col4a4)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    138212622 (col4a4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:eja04147]
    138212622 (col4a4)
   00536 Glycosaminoglycan binding proteins [BR:eja00536]
    138212622 (col4a4)
Exosome [BR:eja04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   138212622 (col4a4)
Glycosaminoglycan binding proteins [BR:eja00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   138212622 (col4a4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 138212622
NCBI-ProteinID: XP_069029176
LinkDB
Position
Unknown
AA seq 1601 aa
MSTKHQQTGQTTFTSMVSLPEHRGDLTEPCGGRDCSTCQCFPAKGAMGSPGSLGQQGPQG
PPGFPGPQGPPGEKGQKGVEGLTGAPGLKGDSGVAGVPGFPGLEGVPVRSPTSFNLSASS
SDWVIQDLLEVPVFQVWTDVTEPEDSEEKLGFLEHKDPMENRSEPQYQTLIAQSSGFPGL
KGFPGDLAINFIQYPGVPGDAGPGGLPGLQGEQGFPGPIGALGPAGLDGTNGDQGLQGPP
GPFEYVDPPEDLYIKGEEGPQGNKGVCGAQGLPGLDALPGIKGEKGIVGFPGPRGFLGVP
GLLGEEGFKGIRGSPGLPGLIGREGPKGMMGDPGPKGLPQDEEVIHIGVVGDPGDLGLRG
PPGDMGVMGIHGTPGAPGRSIPGPAGVLGQRGVPGSNGDKGDPGQTYTDGPTPGEPGKPG
RPGPRGPRGEPGIPGRYCLPGVPGQPGDTGAQGPPGAQGFPGFKGGGGDCSCGPPVDLRG
LRGPRGEMGPPGFPGAPGAPGLRGERGSPGNTGESGEQGPVGFRGVTGFKGQKGEFTVVD
IKGEKGNRGQPGPPGRQGFSGRRGLDGSPGTSGNPGPPGQSSLSPPGDTGPTGASGPKGL
SGPSGPPGPSVVGVVGQQGLPGDPGSAGFPGFPGPKGVKGDTLPCVPRNPGAPGEKGDTG
STGYTGLPGPPGFRGITGPDGSKGDKGQYGLPGPPGRLGPQGFVGDTGDEGREGFSYGGD
PGSPGLPGSPGLHGPAGNSDVGPAGPIGFPGPLGSPGPKGVPGPPGTDGQAGILGLPGDP
GAKGQRGEDGAPGVIGPPGSSSDQCDAGKPGPRGRFGPQGPIGPPGFLGEKGELGVEGPP
GFGPRGPLGKPGSPGFPGYRGPPGPSGPEADSGLPGPSGQKGSKGAQGATGKPGYPGING
PPGIAGPLGHPGSYGEPGPPGPTGRIGPPGFIGFPGETGDQGDPGCPGEPGESGRPGCPG
PKGDKGDSTRVSGPPGDKGLPGDFGHSGASGPRGDPGGPGFLGSAGQKGCKGDPGFRGDP
GELGVVGPPGPRGRGGLPGLPGKAGADGPQGPQGCSGLQGPPGPLGLHGLDGLKGVKGDM
GTRGQKRVDLLLKNQNLKFLCVPSGLGVAGPPGCKGLPGDKGPPGPPGPRGLSQPGPPGS
RGPPGSKGPPGASGPPGDPGVDCIGPTLGPDGDPGLVGPDGEPGCAGVVGDPGPNPPTPG
DDGDNGDAGCRGPPGQKGASGLKGLPGIPGGPGPRGMAGSPGLMGIPGNRGPEGCAGPSS
PPGLKGSAGPMGPKGEKGRVFPCPTLPPAPTGSPGPPGPPGQAGDAGLPGEFGETGPKGK
KGDPGCEGPIGSEGSPGPDGDRGYPGVQGEIGVVGDKGEQGPIGDYGPPGPTQNLNSGFL
LVIHSQSKKVPTCPLNMKVVWEGYSLLYLEGQEKAHTQDLGQAGSCMRIFSTMPFSSCNM
GTCSYASRNDKSYWLSTTAAVPSIPVDGASIEDHISRCVVCEAPSSPVALHSQTSNQPDC
PPSWTSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFRAQPFMECQGPRGTCHYFANIY
SFWLTRVEATSSASNSSSTTLTSSWQQRENIGRCNVCMRGE
NT seq 4806 nt   +upstreamnt  +downstreamnt
atgtccactaaacaccagcagactggacagaccaccttcacctctatggtgtccctgcca
gaacaccgaggcgacctgacagagccttgcggcgggcgggactgctccacctgtcagtgt
tttccagccaagggagcgatgggttctccgggttctctaggtcagcagggacctcagggt
ccaccgggcttcccgggccctcagggacctccaggagagaagggccagaaaggagtcgaa
gggctgactggagctccaggactgaaaggagactcgggagtcgccggcgttcctggtttt
ccaggtttggagggagtgccggtaagaagtcccacctctttcaacctatcagctagctcc
tctgattgggtcatccaggacctgctggaggtcccggttttccaggtctggacggatgta
acggaaccagaggacagcgaggagaaactgggcttcctggagcacaaggacccgatggag
aaccggtcagaacctcagtaccagacactgatcgctcagtcgtcaggttttccaggactg
aagggatttccaggagacctggcgatcaacttcatccagtaccccggagtacctggagac
gccgggcccggtggactgcctggtctgcagggtgaacaggggtttccaggcccgatagga
gctctgggtccggcaggactggacggaaccaacggggatcagggcctccaggggcctccg
gggccgtttgagtatgttgaccctccagaggacctgtacatcaaaggagaggagggccct
caagggaataaaggagtctgtggagctcagggactgccgggtctggatgcactgcccggg
atcaaaggagagaaggggattgtgggatttcctggacccaggggttttttgggagtcccc
ggtctgctcggagaggaagggttcaaggggatccgaggaagcccgggtctcccaggactg
atcggacgagaaggtccgaagggcatgatgggagatccaggtcctaaaggccttcctcag
gacgaagaggtcatacacatcggtgtcgtcggggaccccggggatctcggactgagaggc
cctccaggagacatgggggtgatgggaatacacggaaccccaggagcccccggcagatca
atacctggaccggctggtgttctgggtcagagaggagttccaggatccaatggggacaaa
ggagatccaggacagacatatacagatgggcccacaccgggagaacctggaaaaccagga
cgtcctggacccagagggccaagaggagagccgggtattccaggcagatactgtcttccc
ggggtcccaggacagcctggagatacaggtgcacaggggcccccaggggctcagggcttc
ccagggttcaaaggtggcggcggcgactgttcttgtggtcccccggtcgatctgaggggc
ctccgtggtcccaggggtgaaatggggcctccagggttccccggagctccgggggccccg
ggcctgagaggagagagaggttcacctggaaacacaggagagagcggagaacagggtccg
gttggttttcgaggcgtcacagggttcaaaggtcagaagggagagttcacagtggtggat
attaaaggtgagaagggaaaccggggccagccgggccctccagggagacaaggattctca
gggaggagaggactcgacgggtccccggggacctcaggaaaccccggccctccggggcag
agttccctcagccctcctggggacacaggccccacaggagcctcagggccaaagggactc
tcgggaccttcaggtccaccaggaccaagtgtagtgggagtggtgggacagcaggggctc
cctggggacccgggatctgcagggttccctggcttcccggggcctaagggagtcaaaggt
gacactctgccctgcgtaccccgaaaccccggggcccccggagagaagggagacaccggg
agtacaggttacacaggtcttccaggtcctccaggttttcgtggcatcactggaccagat
ggatctaaaggagacaaaggacagtacggacttcctggaccacctgggagactaggacct
caaggttttgtaggagacaccggagacgaaggacgtgaaggcttcagttacggtggagat
ccaggctctccggggctcccaggttctcctggactccacggaccagcagggaactctgat
gtcgggccggcaggacctatcggcttcccggggcctctgggctctccgggacctaaagga
gtcccggggccccccggcacagatggacaagcaggtatcctgggtctgcctggagacccc
ggagcaaagggtcagagaggagaggatggggccccgggagttatcggcccccccggatcc
tcatctgaccagtgtgatgcaggaaaacctggtccaaggggccgctttggcccccaggga
cccattggtcccccaggctttttgggggagaaaggagagctcggggtcgagggccctcca
ggttttggtcctcgagggcctctcggtaaaccgggctctccaggttttcctgggtaccgc
gggcctccgggcccctctggccccgaagcggactcaggcctgccggggcccagtggtcag
aaaggaagtaaaggtgcacaaggagctacaggtaagccgggataccctggcatcaatgga
cccccaggtattgcaggacctctgggacacccaggatcctacggagaaccaggacctcca
ggaccgactggacgtatcgggcctccgggattcattggcttccccggagagaccggagac
cagggtgacccgggatgtccgggggaaccgggagagtccggtcgcccaggatgtccggga
cccaaaggtgataaaggagactctaccagggtttctggcccacctggagataagggcctt
cctggagactttgggcactcaggagcttctggaccccgaggagatcctggaggaccaggt
ttccttggttctgctggacaaaaaggatgtaaaggggacccaggtttccgtggagaccca
ggtgaattaggtgtggtcggaccacccggtcccagaggtcgtggaggtcttccaggtctt
cctggtaaagcgggcgccgacggtccgcagggtccgcagggctgctcgggactccaaggt
cctcctggaccgctgggacttcacggactggacggactgaaaggagtgaagggggacatg
gggaccagaggacagaagcgtgtagacctgcttttaaagaaccagaaccttaaatttctg
tgtgtcccttcaggtctgggtgtcgcaggtcctccaggctgcaaaggtcttccaggagat
aagggtcctccaggtcccccaggtcctcgtgggttgtcccagcctggtccacccggttcc
agaggccccccgggatccaaaggacctccaggtgcttctggacctccaggtgatcctgga
gtggactgtataggtccaaccctgggaccagatggagatcctggtcttgttggtccagat
ggagagccagggtgtgccggtgtcgtgggggatccgggtccaaaccctccgactcctggg
gacgatggggacaacggggacgcagggtgccggggcccaccgggacaaaaaggagcttca
gggttgaaaggactgccgggcatccctggaggtccaggaccgagaggtatggccggtagt
ccaggtctgatgggaataccgggtaatcggggtcctgaaggttgtgccggtcccagtagt
cctccaggactgaaggggtcagcgggaccgatgggtccaaagggggagaaagggcgagtg
ttcccttgccccacgttacctccagcaccaacaggctccccaggaccacctggaccccct
ggtcaggctggagatgcaggtctgccgggagaatttggtgaaactgggcctaaaggtaag
aagggggatcccggatgtgagggaccgatcggttctgagggatccccaggtccagatgga
gacagaggatatcctggcgtgcagggggagattggagtcgtgggggacaaaggtgaacaa
ggtccaattggtgactacggtcctcctggaccaacccaaaacctgaactcaggcttcctg
ttggtgatacacagccagtcgaagaaggttcccacctgtcccctgaacatgaaggtggtg
tgggagggctacagtctgctgtacctggagggtcaggagaaggcccacactcaggacctg
ggtcaggccggctcgtgtatgcgcatcttctccaccatgccgttctcctcctgcaacatg
ggaacctgctcgtacgccagccgcaacgataagtcctactggctgtccacgacagcggcg
gttcccagcatacccgtggacggagcctccatcgaggaccacatcagccgctgcgtggtc
tgtgaagccccctcgtcaccggttgccctgcacagccagacctccaaccagcccgactgc
ccccccagctggaccagcctgtggaccggatactccttcctcatgcatacaggtgcgggg
gacgagggcggcggccagtctctgacatcatcaggcagctgtctgacggacttcagggcc
cagcccttcatggagtgtcaggggccgcgaggaacttgccactacttcgccaacatctac
agcttctggctgacccgggtggaggcgacaagctccgcctccaacagctcctccaccacg
ctgaccagcagctggcagcagagggagaacatcgggaggtgcaacgtctgcatgagggga
gagtga

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