Embiotoca jacksoni (black perch): 138213463
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Entry
138213463 CDS
T10523
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03013
Nucleocytoplasmic transport
eja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138213463 (upf2)
03015 mRNA surveillance pathway
138213463 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eja03019
]
138213463 (upf2)
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138213463 (upf2)
mRNA cycle factors
P-body specific factors
138213463 (upf2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
pPIWI_RE_Y
Motif
Other DBs
NCBI-GeneID:
138213463
NCBI-ProteinID:
XP_069030705
LinkDB
All DBs
Position
Unknown
AA seq
1285 aa
AA seq
DB search
MPAERKRSINMDEKEVCTFGSKEKEKDREAERRPGSARDKAKDEAKMSGKKDGGGGKEEK
RKRLEEEKKKKEEKERKKKEEEKQKAEEEQKKKEEEEKRQQEEQERKLQEEEAKRQREEE
AALLKEKEEGHQLHQEAWERHQCRKELRVRNQNAHEGRPEEAFFSRLDSSLKKNTAFVKK
LRTLTEQQRDSLSNDFGSLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFHQRYAEFA
PLLLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGT
DRETHTHVSVVISFCKHCGDDIAGLVPRKVKLAADKFRLAFPPSEIIGTEKQQPFQNLLR
EYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLA
DLLDENMPDLPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLKAF
VPAILFKDNEKSGAAKDKDDGKDCKDGKDAAGSSSSAATTTEELEMELEAMDIADEPLEL
EGADEAESEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFC
MNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHI
RKKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETSGR
FLFRSPESHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVKKKRPPLQ
EYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEGKSYLICCMVNIWNVKYNSIHCVANLLA
GLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRT
LFSFISFGVNQDGSASPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRY
IWWKKSLDVWTKDHPFPIDIDYMITDTLELLRPKMRLSCSLEEATKQVTDLEREVLVKLG
LIMGKDGRSSAMSEGEVLDEEDDDDDEEGGAETEEQSGNESEMNEQEEDEGSENEEEERE
EEEEENTDYLTDSNKENETDEESNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRS
GETVKVHQLDVAIPLQLKSQLKKGGSGPPSIGDADADISETMQFVMLTRKGNKQQYKILN
VPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRE
RRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaacgcaagcgctcaataaacatggacgagaaagaagtttgcaccttcggc
agcaaggagaaggagaaggaccgcgaggcggagaggagaccgggctctgctcgggacaaa
gcgaaagacgaggccaagatgagcgggaaaaaggacggcggcggtggcaaggaggagaag
agaaagcgcctggaggaggagaagaagaagaaagaggagaaggagcggaagaagaaggaa
gaggagaagcagaaagcggaggaggagcagaagaagaaggaggaggaggagaagaggcag
caggaggagcaggagaggaagctgcaggaggaggaggccaagcggcagcgcgaggaggag
gcggctctcctcaaggagaaggaggagggccatcagctgcaccaggaggcctgggagcgc
caccagtgcaggaaggagctgcgcgtccggaaccagaacgcccacgagggtcgacccgag
gaggccttcttcagccgcctggactccagcctcaagaagaacacggccttcgtcaagaag
ctgcgcacgctcaccgagcagcagcgcgactcgctctccaacgacttcggctcgctcaac
ctcagcaagtacatcggcgaggcggtgagctccgtggtggaggccaagctgaagatctcc
gacgtgggctgcgccgtgcacctgtgctcgctcttccaccagcgctacgccgagttcgcg
ccgctgctgctgcaggcgtggaagaagcacttcgaggcgcgcaaggaggacaaggcgccc
aacgtcagcaagctgcgcaccgacctgcgcttcatcgccgagctcaccatcgtcggcctc
ttcaccgacaaggagggcctgtcgctcatctacgagcagctgaagaacatcatcggcacc
gaccgggagacgcacacgcacgtgtcggtggtgatcagcttctgcaagcactgcggcgac
gacatcgccggcctggtgccgcgcaaggtgaagctggcggccgacaagttccggctggcc
ttcccgccgagcgagatcatcggcacggagaagcagcagcccttccagaacctgctgcgc
gagtacttcacctcgctcaccaagcacctgaagaaggaccaccgcgagctgcagaacatc
gagaggcagaacagacgcatcctgcactccaaaggcgagctgagcgaggaccggcacaag
cagtacgaagagttcgccacctcctaccagaagctgctggccaacactcagtcgctggcc
gacctgctggacgagaacatgccggacctgccgcaggacaagacggtgcaggaggagcac
ggccccggcatcgacatcttcacccccggtaagcccggcgagtacgacctggagggagga
atctgggaggacgaggacgctcgcaacttctacgagaacctggtggacctgaaggcgttc
gtccccgccatcctcttcaaggacaacgagaagagcggcgcggccaaagacaaggacgac
ggcaaagactgcaaggacgggaaggacgcagccggcagcagcagcagcgccgccaccacc
accgaggagctggagatggagctggaggcgatggacatcgcagacgagccgctggagctg
gagggagcggacgaggcggagagcgaagagctggccaagaagctgctggacgagcaggaa
caagaggacgaggaggcgaacacgggctcccacctgaagctcatcgtggacgccttcatc
caacagctgcccaactgcgtgaacagagacctcatcgacaaggccgccatggacttctgc
atgaacatgaacactaagtccaacaggaggaagctggtgcgagcgctcttcaccgtcccc
aggcagcggctggatcttctccccttctactcccgcctggtggccactctgcacccctgc
atgtccgacgtggccgaggacctctgctccatgctgaagggcgacttcaggtttcacatt
cggaagaaggaccagatcaacatcgagaccaaaaacaaaacggtgcgcttcataggcgag
ctggcaaagttcaagatgttctccaagacagacacgcttcactgtctgaaaatgctgctg
tctgatttcacccaccaccacatcgagatggcctgcacgctgctggagacctccggccgc
ttcctgttcagatcgcctgaatctcacctgagaaccagcgtcctgctggaacaaatgatg
cgtaagaagcaggctcagcacctggacgcccgctacgtcaccatggtggagaacgcctac
tactactgtaacccgccgcccatggagaagacggtgaagaagaagaggccgccgctgcag
gagtacatccgcaagctgctctacaaggacctgtccaaggtgaccacggagaaggtgctg
cggcagatgcgcaagctgccgtggcaggaccccgaggggaagagctacctgatctgctgc
atggtcaacatctggaacgtcaagtacaacagcatccactgcgtggccaacctgctggct
ggcctggtggcctaccaggaggacgtgggcatccacgtggtggacggcgtgctggaggac
atccggctgggcatggaggtcaaccagcccaagttcaaccagcggcgcatcagcagcgcc
aagttcctgggcgagctctacaactaccgcatggtggagtcggccgtcatcttccgcacc
ctcttctccttcatctccttcggggtgaaccaggacggcagcgccagccctctggaccct
ccggagcacctgttccgcatccgcctggtctgcacgctgctcgacacctgcggccagtac
ttcgaccgaggctccagcaagaggaagctggactgcttcctcatctacttccagcggtac
atctggtggaagaagagcctggacgtgtggacgaaggaccacccgttccccatcgacatc
gactacatgatcaccgacaccctggagctgctgcggcccaagatgaggctgagctgctcg
ctggaggaggcgaccaagcaggtcaccgacctggagagggaggtgctcgtcaagctgggc
ctcatcatggggaaggacggccgctccagcgccatgagcgagggggaggtcctcgacgag
gaggacgacgacgacgacgaagagggcggcgccgagaccgaggagcagtcgggcaacgag
agcgagatgaacgagcaggaggaggacgaagggtcagagaacgaagaagaggagagggag
gaagaggaagaggagaacaccgactacctgacggactccaataaagaaaacgagaccgac
gaggagagcaacgaggtcaccatccgaggaggtggactgaagcacgtcgcctgcgccgag
gacgaagacttcatccaggctctggataagatgatgctggagaacctgcagcagcgtagc
ggtgagacggtgaaggtccaccagctggacgtggccatcccgctgcagctgaagagccag
ctgaagaagggcggctcggggccgccgagcatcggcgacgccgacgccgacatctccgag
accatgcagttcgtcatgctgacccgcaaaggcaacaagcagcagtataagatcctgaac
gtgcccctgtcgtcccacctggcggcgaaccacttcaaccagcagcaggcggagcaggag
gagcgcatgaggatgaagaagctgacgctggacatcaacgagcgtcaggagcaggaggac
taccaggagatgatgcagtctctcgctcagcgtccggctccggccaacaccaaccgggag
cgccggcctcgctaccagcacccgaagggcgcccccaacgccgacctcatcttcaagacc
ggaggaaggagacgctga
DBGET
integrated database retrieval system
