Embiotoca jacksoni (black perch): 138215338
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Entry
138215338 CDS
T10523
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138215338 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eja03041
]
138215338 (sf3b1)
03036 Chromosome and associated proteins [BR:
eja03036
]
138215338 (sf3b1)
Spliceosome [BR:
eja03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
138215338 (sf3b1)
Complex B
138215338 (sf3b1)
Complex C
U2 SnRNP specific factors
138215338 (sf3b1)
Chromosome and associated proteins [BR:
eja03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
138215338 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
138215338
NCBI-ProteinID:
XP_069033534
LinkDB
All DBs
Position
Unknown
AA seq
1314 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKASLLEDGEQGVGLDSTGFYDQEIYGGNDSRFAGYVTSI
AANEQEDDDEDDTSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKSG
DLKAVNGSAASQAVIKRKRRWDQTADQTPTNATPKKMSSWDQADVSTETPGHTPAHTPSN
SRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPE
GYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDDKNVYVRYELEYVL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacgcacgaagacattgaggcccagatcctggagatccagggg
atgaaagcctccctgctggaggatggagagcagggagtgggcctggactccaccggcttc
tatgatcaggagatctatggaggcaacgacagccgatttgccggatacgtcacttcaatt
gctgccaatgaacaggaggatgacgatgaagacgatacatcgacgagcttgttgggacaa
aagaagcccgggtatcacgcgccggtggcaatactcaatgccattcctcagtcagacgag
caatatgacccatttgcagaacatcgtccacagaagatcgcagagcgggaagatgaatac
aaagcccggcgcagacagatgatcatctcgcccgagcgtctcgacccttttgcagatggg
ggcaaaacgccggaccccaagctgcaggtcaggtcgtacgtggacgtcatgttggagcag
aacctgtccaaagaggagagagagattcgtcagcagctggcagagaaggccaaatcaggg
gacctgaaagctgtcaacgggtccgctgcctcccaagctgtcataaaacgtaagcgtcgc
tgggaccagacagctgaccaaaccccaaccaatgctacacccaaaaagatgtccagctgg
gaccaagctgacgtctcgactgagactccaggacacacccctgcacacacaccttcaaac
agccgatgggatgaaacccctggtcgccctaaaggcagtgagacccccggggccactccc
agtagtcgcatgtgggaccccactccgagccacacgcctgccggggccgccacccctggc
agggacacgcctggccacgccacgcctggtcacggtggagccacaggaagcgttcgcaag
aaccgctgggatgaaaccccgaagacggagagggagaccccgggacacggcagcggctgg
gcggaaaccccacgaacagaccgaggagacgagtcggtgggcgagactccaaccccagga
gccagtaagaggaagtctcggtgggatgaaaccccggccagccagatgggatcttcaacc
ccactactcaccccaggaaaaactcccataggaacgcctgctatgaacatggcgaccccc
accccgggacacctgatgagcatgactccagagcagctgcaggcatggaggtgggagagg
gaaatagatgagaggaaccggcctcttacagacgaggagcttgatgccatgtttcctgag
ggatacaaggtcctacctcctcctgcaggctacgtaccaatccgtactccggcccgtaag
ctgtcggccacgcccacacccatcggaggtatgacgggcttccacatgcaggtagaggat
cgcaccacgaaacagatgaacgaccagccctcagggaacctccccttcctcaaacctgac
gacatccagtattttgacaaactcctggtggaagtggatgagtccacgctgagccccgag
gagcagaaagaaaggaagataatgaagctgctgctgaagattaaaaatggaacaccgccc
atgaggaaggccgccctgcgtcagatcacggataaggctcgtgagttcggagcaggtccc
ctcttcaaccagatcctgccgctgctcatgtcccccaccctggaggaccaggagcgccac
ctgctggttaaagtcattgaccgcattctttacaaactggacgacctggtccgaccatac
gtgcacaagatcctggtggttatcgagccgctgctgattgatgaggactattacgccaga
gtagaaggcagagagatcatctccaacttggcgaaggctgctggtttggctacgatgatc
tccacgatgcgacctgatattgacaacatggacgagtacgtcagaaacacgacagctcga
gcctttgccgtcgtggcctctgccctgggaatcccctccctcctgcccttcctcaaggct
gtgtgtaaaagcaagaagtcctggcaggctcggcacaccggcatcaagatcgtgcagcag
atcgccatcctcatgggctgcgccatcctgcctcaccttcgcagcctggtggagatcatc
gaacacggtctggtggatgagcagcagaaagtgaggaccatcagtgctctggctatagct
gccctcgctgaagccgctacgccctacggtatcgagtcctttgactcggtcctcaaacca
ctgtggaagggcatcaggcagcacagagggaagggtctggctgctttcctcaaagctatc
ggttatctcatcccattgatggatgctgaatacgcaaactactacaccagagaggtgatg
ctgatcctcatcagagagtttcagtcccctgacgaggagatgaaaaagattgtactcaag
gtggtgaagcagtgctgcggcactgacggtgtggaggccaactacatcaagaccgagatc
ctgccccccttcttcaagcacttctggcagcacaggatggctctggacagacgcaactac
cgacagctggttgacaccacggtggagttggctaacaaagtgggagccgcagagatcatt
tctcgcatcgtggatgacctgaaggacgaggctgagcagtacagaaagatggtgatggag
accattgaaaaaataatgggcaacctgggtgcagctgacatcgaccacaagctggaggag
cagctgatcgacgggatcctgtacgccttccaggaacagaccacagaggactcggtgatg
ctgaacggcttcggtaccgtggtcaacgccctcgggaagcgcgtgaagccctacctgcct
cagatctgcggtacggtgctttggcgtctcaacaacaagtcggccaaagtgcgccagcaa
gccgctgatctgatctctcgtacagccgtggtcatgaagacttgccaggaggagaagctg
atgggtcacctgggtgtggtgctgtacgagtacctgggagaggagtaccccgaggttttg
ggcagcatcctgggagctctgaaggccatcgttaacgtgatcggtatgcacaagatgact
ccaccaatcaaagacctgcttcctcgtctgactcccatcctgaagaaccgacacgagaag
gttcaggagaactgcatcgacctggtgggcaggatcgccgacaggggtgctgaatatgtg
tcggccagggagtggatgagaatctgctttgagctgctggagctgctgaaggctcacaag
aaggccatccgcagagccaccgtcaacacgttcggttatatcgccaaagccatcggacct
cacgacgtcttggccactctgctcaacaacctgaaggtccaggagcgtcagaaccgagtc
tgcacgaccgtggccatcgccatcgtcgccgagacctgctcgccgttcaccgtgctgccg
gcgctcatgaacgagtaccgcgtgcccgagctcaacgtgcagaacggcgtgctcaagtcg
ctctccttcctgttcgagtacatcggcgagatgggaaaagactacatctacgccgtcacg
ccgctgctggaggacgcgctcatggacagagacctggtccaccggcagacggccagcgcc
gtggtccagcacatgtctctgggcgtctacggcttcggctgcgaagactccctcaaccac
ctgctgaactacgtgtggcccaacgtgttcgagacgtcgcctcacgtcatccaggccgtg
atgggggccctggaggggctgagggtcgccatcgggccctgccgcatgctgcagtactgc
ttacagggtttgttccatccggcccggaaggtgcgtgacgtctactggaagatctacaac
tccatctacatcggctcccaggacgccctgatcgcacactacccacaggtgtacaacgac
gacaagaacgtgtacgtgcgctacgagctggagtacgtcctgtaa
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