KEGG   Embiotoca jacksoni (black perch): 138215338
Entry
138215338         CDS       T10523                                 
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
eja  Embiotoca jacksoni (black perch)
Pathway
eja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    138215338 (sf3b1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:eja03041]
    138215338 (sf3b1)
   03036 Chromosome and associated proteins [BR:eja03036]
    138215338 (sf3b1)
Spliceosome [BR:eja03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    138215338 (sf3b1)
 Complex B
    138215338 (sf3b1)
 Complex C
   U2 SnRNP specific factors
    138215338 (sf3b1)
Chromosome and associated proteins [BR:eja03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    138215338 (sf3b1)
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central GST_N_4 DUF2298
Other DBs
NCBI-GeneID: 138215338
NCBI-ProteinID: XP_069033534
LinkDB
Position
Unknown
AA seq 1314 aa
MAKIAKTHEDIEAQILEIQGMKASLLEDGEQGVGLDSTGFYDQEIYGGNDSRFAGYVTSI
AANEQEDDDEDDTSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKSG
DLKAVNGSAASQAVIKRKRRWDQTADQTPTNATPKKMSSWDQADVSTETPGHTPAHTPSN
SRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPE
GYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDDKNVYVRYELEYVL
NT seq 3945 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaagacgcacgaagacattgaggcccagatcctggagatccagggg
atgaaagcctccctgctggaggatggagagcagggagtgggcctggactccaccggcttc
tatgatcaggagatctatggaggcaacgacagccgatttgccggatacgtcacttcaatt
gctgccaatgaacaggaggatgacgatgaagacgatacatcgacgagcttgttgggacaa
aagaagcccgggtatcacgcgccggtggcaatactcaatgccattcctcagtcagacgag
caatatgacccatttgcagaacatcgtccacagaagatcgcagagcgggaagatgaatac
aaagcccggcgcagacagatgatcatctcgcccgagcgtctcgacccttttgcagatggg
ggcaaaacgccggaccccaagctgcaggtcaggtcgtacgtggacgtcatgttggagcag
aacctgtccaaagaggagagagagattcgtcagcagctggcagagaaggccaaatcaggg
gacctgaaagctgtcaacgggtccgctgcctcccaagctgtcataaaacgtaagcgtcgc
tgggaccagacagctgaccaaaccccaaccaatgctacacccaaaaagatgtccagctgg
gaccaagctgacgtctcgactgagactccaggacacacccctgcacacacaccttcaaac
agccgatgggatgaaacccctggtcgccctaaaggcagtgagacccccggggccactccc
agtagtcgcatgtgggaccccactccgagccacacgcctgccggggccgccacccctggc
agggacacgcctggccacgccacgcctggtcacggtggagccacaggaagcgttcgcaag
aaccgctgggatgaaaccccgaagacggagagggagaccccgggacacggcagcggctgg
gcggaaaccccacgaacagaccgaggagacgagtcggtgggcgagactccaaccccagga
gccagtaagaggaagtctcggtgggatgaaaccccggccagccagatgggatcttcaacc
ccactactcaccccaggaaaaactcccataggaacgcctgctatgaacatggcgaccccc
accccgggacacctgatgagcatgactccagagcagctgcaggcatggaggtgggagagg
gaaatagatgagaggaaccggcctcttacagacgaggagcttgatgccatgtttcctgag
ggatacaaggtcctacctcctcctgcaggctacgtaccaatccgtactccggcccgtaag
ctgtcggccacgcccacacccatcggaggtatgacgggcttccacatgcaggtagaggat
cgcaccacgaaacagatgaacgaccagccctcagggaacctccccttcctcaaacctgac
gacatccagtattttgacaaactcctggtggaagtggatgagtccacgctgagccccgag
gagcagaaagaaaggaagataatgaagctgctgctgaagattaaaaatggaacaccgccc
atgaggaaggccgccctgcgtcagatcacggataaggctcgtgagttcggagcaggtccc
ctcttcaaccagatcctgccgctgctcatgtcccccaccctggaggaccaggagcgccac
ctgctggttaaagtcattgaccgcattctttacaaactggacgacctggtccgaccatac
gtgcacaagatcctggtggttatcgagccgctgctgattgatgaggactattacgccaga
gtagaaggcagagagatcatctccaacttggcgaaggctgctggtttggctacgatgatc
tccacgatgcgacctgatattgacaacatggacgagtacgtcagaaacacgacagctcga
gcctttgccgtcgtggcctctgccctgggaatcccctccctcctgcccttcctcaaggct
gtgtgtaaaagcaagaagtcctggcaggctcggcacaccggcatcaagatcgtgcagcag
atcgccatcctcatgggctgcgccatcctgcctcaccttcgcagcctggtggagatcatc
gaacacggtctggtggatgagcagcagaaagtgaggaccatcagtgctctggctatagct
gccctcgctgaagccgctacgccctacggtatcgagtcctttgactcggtcctcaaacca
ctgtggaagggcatcaggcagcacagagggaagggtctggctgctttcctcaaagctatc
ggttatctcatcccattgatggatgctgaatacgcaaactactacaccagagaggtgatg
ctgatcctcatcagagagtttcagtcccctgacgaggagatgaaaaagattgtactcaag
gtggtgaagcagtgctgcggcactgacggtgtggaggccaactacatcaagaccgagatc
ctgccccccttcttcaagcacttctggcagcacaggatggctctggacagacgcaactac
cgacagctggttgacaccacggtggagttggctaacaaagtgggagccgcagagatcatt
tctcgcatcgtggatgacctgaaggacgaggctgagcagtacagaaagatggtgatggag
accattgaaaaaataatgggcaacctgggtgcagctgacatcgaccacaagctggaggag
cagctgatcgacgggatcctgtacgccttccaggaacagaccacagaggactcggtgatg
ctgaacggcttcggtaccgtggtcaacgccctcgggaagcgcgtgaagccctacctgcct
cagatctgcggtacggtgctttggcgtctcaacaacaagtcggccaaagtgcgccagcaa
gccgctgatctgatctctcgtacagccgtggtcatgaagacttgccaggaggagaagctg
atgggtcacctgggtgtggtgctgtacgagtacctgggagaggagtaccccgaggttttg
ggcagcatcctgggagctctgaaggccatcgttaacgtgatcggtatgcacaagatgact
ccaccaatcaaagacctgcttcctcgtctgactcccatcctgaagaaccgacacgagaag
gttcaggagaactgcatcgacctggtgggcaggatcgccgacaggggtgctgaatatgtg
tcggccagggagtggatgagaatctgctttgagctgctggagctgctgaaggctcacaag
aaggccatccgcagagccaccgtcaacacgttcggttatatcgccaaagccatcggacct
cacgacgtcttggccactctgctcaacaacctgaaggtccaggagcgtcagaaccgagtc
tgcacgaccgtggccatcgccatcgtcgccgagacctgctcgccgttcaccgtgctgccg
gcgctcatgaacgagtaccgcgtgcccgagctcaacgtgcagaacggcgtgctcaagtcg
ctctccttcctgttcgagtacatcggcgagatgggaaaagactacatctacgccgtcacg
ccgctgctggaggacgcgctcatggacagagacctggtccaccggcagacggccagcgcc
gtggtccagcacatgtctctgggcgtctacggcttcggctgcgaagactccctcaaccac
ctgctgaactacgtgtggcccaacgtgttcgagacgtcgcctcacgtcatccaggccgtg
atgggggccctggaggggctgagggtcgccatcgggccctgccgcatgctgcagtactgc
ttacagggtttgttccatccggcccggaaggtgcgtgacgtctactggaagatctacaac
tccatctacatcggctcccaggacgccctgatcgcacactacccacaggtgtacaacgac
gacaagaacgtgtacgtgcgctacgagctggagtacgtcctgtaa

DBGET integrated database retrieval system