KEGG   Embiotoca jacksoni (black perch): 138215667
Entry
138215667         CDS       T10523                                 
Symbol
lig1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
eja  Embiotoca jacksoni (black perch)
Pathway
eja03030  DNA replication
eja03410  Base excision repair
eja03420  Nucleotide excision repair
eja03430  Mismatch repair
Brite
Enzymes [BR:eja01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     138215667 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     138215667 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     138215667 (lig1)
DNA replication proteins [BR:eja03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    138215667 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     138215667 (lig1)
DNA repair and recombination proteins [BR:eja03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     138215667 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     138215667 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     138215667 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 138215667
NCBI-ProteinID: XP_069034041
LinkDB
Position
Unknown
AA seq 980 aa
MQRSIASFFQPKNQNNEVRKKRIDEPVKKPLKSPLKVQNGVPEADSPVKKVSKRSRQILD
SDDDEAPAVKEPVGDREASGKTEKRDVVFKAVPTPLSPPPATPTPVTPATPVTPATPVTP
TTPASSSSPGTPSSISPSGIVKRKTARKMFPKRKLDDSRREEAEEGQQSKRPRVETSAGS
AGNNEEPMEEEVKEETAEQAVTDSPVEEVEKRKKGEEEEEKEKKKKKKKEKKKKKVVVEK
DTRDKGENPKEQKEAKEQKDKQPARKTPISTFFAPRKAAMKKEEEKEEEKKEEKKEEKEK
EEGGGRKTTAERRSSEEEESKDSKRESTSGPTDYDPSRPNYHPEEHACWRRGQRVPYLAV
ARTFQKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCVYLCLNQLGPAYLGMELGVGET
VLMKAVAQATGRQLDKVKAEAQERGDLGLVAESSRSNQRMMFQPASLTAGGVFRKLKEIA
NMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPP
GQAVMDAGKGMSAESRRAWIEEKSLILKQTYCEMPNYDILIPVLLKEGIDQLPNHCKLTP
GVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTS
KYPDIISRISKVKTASVVSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVC
VYAFDLLYLNGESLVRQPLCRRRALLRESFSEVEGEFVFARFIDSDNTDAIADFLEQSVR
DSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTMDLCVIGAYLGKGKRTGTYG
GFLLACYDEDNEEFQAVCKIGTGFKDEDLEQHHKFLKEHILPNPRPYYRVDQSAEPDLWL
DAVQVWEVKCADLSLSPVYKAAMGLVDPVKGISLRFPRFLRIRDDKNPEDATTGAQIADL
YKKQQQIQNQGDKADPEDDY
NT seq 2943 nt   +upstreamnt  +downstreamnt
atgcagcgcagcatcgcatccttctttcagcccaagaaccagaacaacgaggttcggaag
aaaagaatcgatgaacccgtgaaaaaacctctgaaaagccctctgaaggtgcagaacggc
gtcccggaggccgattctcccgtcaagaaggtttccaaacgcagccgtcagatcctggac
agcgacgatgacgaggcgccggcggtgaaggagcccgttggagacagagaggcttctggg
aaaacggagaagagggatgttgtgtttaaggccgtccccaccccactgtctcctccacca
gccaccccgacgcccgtcaccccagcgacgcccgtcaccccggcgacgcccgtcaccccg
acgaccccggcctcctcgtcttcccctggcactcccagctccatctccccctccgggatc
gtcaagcgtaagacagcgaggaagatgttccccaagaggaagctggacgacagcaggagg
gaggaggctgaggaggggcagcaaagcaagcgcccccgtgtggagaccagcgccggcagt
gcaggaaacaacgaggagcccatggaggaggaggtgaaggaggagacggctgagcaggca
gtgaccgacagcccagtagaggaggtggagaagaggaagaaaggagaggaggaggaggag
aaggagaagaagaagaagaagaagaaggagaagaagaagaagaaagtggtggttgaaaag
gacacgcgagacaaaggagagaacccgaaggagcagaaggaagcgaaggagcagaaagat
aagcagccggccaggaaaactcccatcagcactttctttgctcccagaaaagctgccatg
aagaaggaggaggagaaggaggaggagaagaaggaggagaagaaggaagagaaggagaag
gaggaggggggagggaggaagacgactgccgagaggaggagctccgaggaggaggagagt
aaagactccaaacgcgagtcgacgtccggaccgacagactacgacccgtcccgacccaac
taccacccagaggaacacgcctgctggaggcggggccagagggtgccgtacctggcggtg
gctcgcacctttcagaagatcgaagaggactccggcaggctgagaaacatcgagactctg
tccaacctgctgcgctccgtgctgctgctgtctccagacgacctgctgtgctgtgtgtac
ctgtgtttgaaccagcttggccccgcctacctggggatggagctcggcgttggagagacg
gtgctgatgaaagccgttgctcaagcaaccgggcgacagctggacaaagtcaaagcggag
gcgcaggagagaggagatctgggcctcgtggctgagagttcccgtagcaaccagcgcatg
atgtttcagccagccagtctgaccgcagggggcgtgttcaggaagttaaaggaaatcgcc
aacatgagcggaaactcagccatgaataagaaaatcgacatcatcaaaggcctctttgtg
gcatgccgcttttcagaggcccgctacatcgtcaggtctctggccgggaagctgaggatc
ggcctcgctgagcagagcgtcctgtctgcgctgagccaggccgtctgtctcaccccacct
ggacaagctgtgatggacgcggggaaggggatgagtgctgagagcagacgggcctggatc
gaagagaagagtctcatcctcaaacagacctactgcgagatgcccaactacgacatcctc
atcccggttctgctgaaggagggcatcgaccagctacccaatcactgcaagctgactcca
ggtgtgccgctgagacccatgttggctcatcccaccaagggcgtcggcgaggtgatgaag
aggtttgacgaggcggcgttcacctgcgagtacaaatacgacggggagcgtgcgcagatt
cacatcctggaaaacggcgaagttcgaatattcagccgcaaccaggaggacaacaccagc
aaataccccgacatcatctcccgcatctccaaggtgaagacggcctcggtggtgtcctgc
gtcctggactcggaggcggtggcctgggatcgggagaagaagcagattcagcccttccag
gtcctcaccaccaggaagaggaaggacgtggatgcctcagagatcaaagtccaagtgtgt
gtgtacgccttcgacctcctgtacctgaacggtgagtccctggtacggcagcccttgtgt
cggcgccgtgctctgctgagagaaagcttctctgaggtggagggagagttcgtcttcgcc
cgattcatcgactccgacaacacggacgccatcgcagacttcctggagcagtctgtccga
gactcctgtgaaggcctgatggtgaagactctggagaaggatgcaacctatgaaatcgcc
aagcgctctcataattggctcaagctgaagaaggactacctggagggcgtgggcgacacc
atggacctgtgtgtgatcggggcgtacctggggaaagggaagaggacgggcacctacggg
ggattcctgctggcctgctacgatgaggacaacgaggagttccaggccgtctgcaagatc
gggacgggcttcaaggatgaagatctggagcagcatcacaaattcttaaaggagcacatc
ctgcccaacccccggccctactaccgcgtggaccaatcagccgagcccgacctgtggctg
gacgccgtgcaggtgtgggaggtgaagtgcgccgacctgtcgctgtcgcccgtctacaag
gctgcgatgggattggtggatccagtgaagggcatttctctgaggttcccgcgcttcctt
cggatccgagacgacaagaatcccgaggacgccacgaccggagctcagattgctgatttg
tacaagaagcagcagcagatccaaaaccagggggacaaagctgacccggaggacgactac
tga

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