Eumetopias jubatus (Steller sea lion): 114223939
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Entry
114223939 CDS
T07240
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
eju
Eumetopias jubatus (Steller sea lion)
Brite
KEGG Orthology (KO) [BR:
eju00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
eju03000
]
114223939 (RC3H1)
04121 Ubiquitin system [BR:
eju04121
]
114223939 (RC3H1)
Transcription factors [BR:
eju03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
114223939 (RC3H1)
Ubiquitin system [BR:
eju04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114223939 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_6
zf-RING_4
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
114223939
NCBI-ProteinID:
XP_027978752
LinkDB
All DBs
Position
Unknown
AA seq
1153 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAVLPDE
GAVDLPSRKTPALPNGIVSAGNTVTQLIPRGTDATYDSSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISALPVNPHPVPPRGPTDLPPMPVTKPLQMVPRGSQLYPAQQADVYYQDPRGAA
PPFEPAPYQQGMYYTTPPQCVSRFVRPPPSAPEPGPPYLDHYPAYLQDRVVNSQYGTQPQ
QYPPVYPPHYDGRRVYPAQSYTREEIFRESPIPIEIPPAAVPSYVPESRERYQQMEGYYP
VAPHPTQIRPSYMRDPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPTFHQEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEM
MSCGNNVRDLSVGWISHFTFYQNVESKGMRDQRLDLQRRAAETSDDDLIPFGDRPTVSRF
GAISRTSKTIYQGAGPMQAMAPQGAPTKPINISDYSPYGTHGGWGGSPYSPHQNIPSQGH
FSERERLSMSEVASHGKPLPSAEREQLRLELQQLNHQISQQTQLRGLEAVSNRLVLQREV
NTLAGQSQPPPPPPKWPGMISSEQLSLELHQVEREIGKRTRELSMENQCSLDMKSKLNTS
KQAENGQPEPQNKVPAEDLTLTFSDVPNGSALTQENISLLSNKTSSLNLSEDPEGGGDNN
DSQRAGVTPTSAP
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctctcctgcccaatttgcactcagact
ttcgatgaaacaattcgaaagcccatcagtttgggttgtggccatactgtctgcaagatg
tgcctgaataaactccaccgcaaggcttgcccctttgaccagaccactatcaatacagac
attgagctccttcccgtgaactcagcattgctgcagctagtgggtgctcaggtccctgag
cagcagcccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aaatgtgtagaagaattagcattgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctgagtcgcccaatgcagaggaagctggtgactctg
gtccactgccaactagtggaagaagaaggcaggattcgtgctatgagagcagctcgatct
ttaggtgaacgaacagttacagagctcattcttcagcaccagaatcctcagcaactctcc
tctaatctttgggcagcagttagggctaggggctgccagttccttggaccagcaatgcag
gaggaagctttaaagctggttctcctggccttggaagatggttctgctttgtcaagaaaa
gtattggttctctttgtggtgcaaaggttggagccgcggtttcctcaggcctctaaaact
agcattgggcatgttgtccagctcctttatagagcttcctgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagctaaaagaagaatttagaacctacgaagctttgcgg
cgagaacatgactcccagatagtgcaaattgccatggaagcaggcttacgaattgcacca
gaccaatggtcctctttactttatggagaccagtctcacaagtctcatatgcagtcaatt
attgacaagttgcagaccccagcctcttttgcacaaagtgttcaggaactaacaattgct
ctccagcgaactggcgatccagcaaatttgaaccgactaagaccccatttggagctattg
gcaaacattgaccctagtccagatgctcctcctcctacttgggagcagctagaaaatggg
ctggttgctgtgcggactgtggtacatgggctagtagactatatccagaaccatagcaaa
aagggagcagatcaacagcagcctccacagcatagcaaatataaaacatacatgtgtcga
gatatgaagcagagaggaggatgccctcgtggggccagctgtacatttgcacactcacag
gaggaactggagaagtttcgtaaaatgaacaaacgcctagttcccagaagacccctgagt
gcctctttgggtcagcttaatgaggtgggcctgccttcagcagctgtccttccagatgaa
ggtgcagtggatctgcctagcagaaaaacccctgctctgccaaatggaattgtatcagca
gggaatacggtaacacagctgattccccgagggacagacgccacctacgattctagcctc
aagccaggaaagatagatcatctgagcagtagtgcccctggatcccctcctgacctgcta
gaatctgtccctaagagtatttctgccttacctgtgaatccacatcctgtacctccaagg
gggccgacagacttgcctcctatgcctgtcaccaaaccacttcagatggtaccacgaggt
tctcagttatatccagcacaacaggcagatgtttattatcaggatcctcgaggagctgcg
ccaccatttgaaccagcaccttatcagcagggtatgtactatactacaccaccacagtgt
gtatctcgctttgtcagacctccaccatctgctcctgaacctggtcctccctacttggat
cattatccagcctatctccaagatcgtgtagtaaactctcagtatggcacacagccgcaa
caatacccgcctgtgtacccaccacactatgatggccgccgagtataccccgctcagtct
tacacaagagaggagattttccgagaaagtcctatacccattgagattccacctgcagca
gtaccatcctatgtaccagaatccagagaaagataccagcagatggagggttactatcca
gtggctcctcatccaactcagatcagaccttcgtacatgagagaccctccttatagccgg
cttcctcctcctcctcagccccatcctagtctagatgagctacatcgcagacgaaaggaa
ataatggcccagctagaggaaaggaaggttatctctccacctccttttgcaccttcacca
acattgcctcctacctttcatcaagaggaatttttggatgaagacttgaaggtagctggg
aaatacaaaggaaatgattatagccagtattctccctggtcatgtgacaccatcggctcc
tacattggaaccaaagatgcaaaacccaaagatgtggtggctgcagggagtgtggaaatg
atgagctgtggaaataatgttagagatctaagtgtggggtggatttctcattttactttt
taccagaatgtggagagtaaaggaatgagagatcaacgactggatcttcagagaagagct
gcagaaaccagtgatgatgaccttatcccatttggagaccgaccaactgtatcacggttt
ggtgccatctctagaacctccaaaacaatatatcagggtgctggtccaatgcaggctatg
gcacctcagggagctcccacaaaacctattaatatttcagattatagtccatatggaacc
cacggtggctggggaggttctccatattcacctcatcaaaacataccttctcagggacac
ttcagtgagagggagagactgtccatgtcagaagtggccagtcatggaaaaccccttcca
tctgctgagagggaacagctacgactggaattgcaacaactaaaccatcaaatcagccaa
cagactcagctccgtggactagaggctgttagtaacaggctggtgttgcagagggaggtg
aacaccctggcaggccagtcacagcccccaccaccacctccaaaatggcctggaatgatt
tcaagtgagcagttgagcttggaactgcaccaggtggaaagggaaatcgggaagagaacc
cgggaactgagtatggagaaccagtgttctctggacatgaaaagcaaattgaatacaagt
aagcaagctgaaaacggacaaccagaaccacaaaataaggttccagctgaggaccttaca
ttgacattcagtgatgtaccaaatggctcagcgttgacacaagaaaatatcagcctcctg
tcaaacaagaccagctctctgaacctgtcagaggaccccgagggaggaggtgacaacaat
gactcccagagagcgggagtcacacccacttctgctccctaa
DBGET
integrated database retrieval system
